Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13670 293 / 1e-96 PTAC5 plastid transcriptionally active 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000759 [exp] 534 / 0 AT4G13670 379 / 5e-130 plastid transcriptionally active 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049900 [exp] 306 / 1e-101 AT4G13670 318 / 4e-106 plastid transcriptionally active 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain
Representative CDS sequence Show only first row Show all	>Lus10011733 pacid=23165907 polypeptide=Lus10011733 locus=Lus10011733.g ID=Lus10011733.BGIv1.0 annot-version=v1.0 ATGTCATCGTCGTCTTCTTTCCTCAATCCCATCCCTCTCAATCCTCCTCTTTCTATCATTCCTCGCCATTTCCATCTACTCCCGCTCTCCAAGTCCTCCG TCTCTCTCTGCAAGTCACATGTTTGCTACGCTTCCTCGTCCTCTCCCAATTCCAACTCAAGCTCTTTGGGCTCTGATCGCGATGCCTTGCTTTGGCTGCG AGAGGAGCAGCGGTGGCTGCGCGAGGAGCAACGGTGGCTCCGGGAAGAGCAGAGGTGGTTTCGCGAGAGGGACTCCCTTCTGACTGAGATTCAGTCGTTG AAGCTACGAATTCAGGCACTAGAGGAGCGGATTTCGGTTTCCGCCAGACCTGATGGCTTGCCCGATGCGGGTGCCAATGTTGGGACACTCTTGCAGGTTC TCAAGGAGAGGAGCCTGATCCCCGAGAGCGGGTCGAGTGCAAACCCGATCGTTCTGGAAGAAGAGACGAAAGACAAAGAGGAGACAGTGGAGTCGGCTCC GCCTGCGGTCGTTGTTGAAGTGAAAAGGGAGGAGGAGAAAGTGAGGAAAGCGTTGAAGATGGGAAGCGAAGGAGATGAGGTGCGAGAGATGCAGGAAGCA TTGTCAGAACTGGGATTTTATTCAGGAGAAGAGGATATGGAGTACTCCTGGTTCTCCAGTGGGACTGAGCGCGCCGTGAAGACTTGGCAGGCGACATTAA GTGTTCCTGAAGATGGAGTAATGAGCACAGAGCTCATCGAAAGGCTGTACAACTCAACCAGGACTCCTAAGAAGACAGAAGACACAAAGAGCCATTTCAA TGTTCAACTGAAGGAAGATGGCAATGGCGCTGCAGTTGCTTCTGTAACTGAAATTTCAGAAAAACCGCGGAAAGCTGTGAAGGAAGAAGGTGGGAGAGAA GCAGGGATGTCCAAGCACAGAGTGTTTCTGCTTGGTGAGAATAGGTGGGAGGAACCCTCGAGACTCGTTAGCAAGAGCAAAGAAACCAATGTAAATACGG TGAGGAAGGTGACAAAGTGCCTTACTTGTCGTGATGAGGGCCGTTTATTGTGCCTAGAATGTGATGGAACAGGGGAACCGAACATCGAACCGCAGTTTCT GGAGTGGATAGGAGAAGACACCAAGTGTGCATATTGTGCAGGCCAGGGGTTTACAACGTGTGATGCATGTCGAGGCAAAACAAAATATCCTAGCGGTTAG
AA sequence Show only first row Show all	>Lus10011733 pacid=23165907 polypeptide=Lus10011733 locus=Lus10011733.g ID=Lus10011733.BGIv1.0 annot-version=v1.0 MSSSSSFLNPIPLNPPLSIIPRHFHLLPLSKSSVSLCKSHVCYASSSSPNSNSSSLGSDRDALLWLREEQRWLREEQRWLREEQRWFRERDSLLTEIQSL KLRIQALEERISVSARPDGLPDAGANVGTLLQVLKERSLIPESGSSANPIVLEEETKDKEETVESAPPAVVVEVKREEEKVRKALKMGSEGDEVREMQEA LSELGFYSGEEDMEYSWFSSGTERAVKTWQATLSVPEDGVMSTELIERLYNSTRTPKKTEDTKSHFNVQLKEDGNGAAVASVTEISEKPRKAVKEEGGRE AGMSKHRVFLLGENRWEEPSRLVSKSKETNVNTVRKVTKCLTCRDEGRLLCLECDGTGEPNIEPQFLEWIGEDTKCAYCAGQGFTTCDACRGKTKYPSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	0	1
AT2G30170			Protein phosphatase 2C family ...		Lus10031355 [exp]	1.0	0.9269
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	7.1	0.9140
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	9.7	0.9183
AT5G20140			SOUL heme-binding family prote...		Lus10001847 [exp]	11.4	0.8847
AT5G04810			pentatricopeptide (PPR) repeat...		Lus10028850 [exp]	11.7	0.8605
AT2G23390			unknown protein		Lus10010689 [exp]	12.6	0.8682
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Lus10019895 [exp]	13.7	0.8841
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	19.6	0.9092
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10027068 [exp]	24.5	0.8992
AT1G55370		NDF5	NDH-dependent cyclic electron ...		Lus10002626 [exp]	24.7	0.8784

Compare expression of checked genes

Lus10011733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.