Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24170 863 / 0 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G54660 506 / 1e-175 ATGR2, EMB2360, GR glutathione reductase (.1) AT1G48030 195 / 5e-56 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2) AT3G17240 189 / 4e-54 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT3G16950 140 / 6e-36 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.2) AT4G16155 132 / 7e-33 dihydrolipoyl dehydrogenases (.1) AT5G03630 50 / 3e-06 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G27820 47 / 3e-05 ATMDAR4 monodehydroascorbate reductase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000758 [exp] 922 / 0 AT3G24170 776 / 0.0 glutathione-disulfide reductase (.1.2.3) Lus10018770 [exp] 510 / 1e-177 AT3G54660 879 / 0.0 glutathione reductase (.1) Lus10024857 [exp] 495 / 5e-171 AT3G54660 864 / 0.0 glutathione reductase (.1) Lus10037825 [exp] 186 / 7e-53 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10017102 [exp] 186 / 8e-53 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 184 / 8e-52 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 181 / 9e-51 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10016877 [exp] 135 / 9e-34 AT3G16950 920 / 0.0 lipoamide dehydrogenase 1 (.1.2) Lus10037741 [exp] 134 / 1e-33 AT3G16950 928 / 0.0 lipoamide dehydrogenase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050000 [exp] 895 / 0 AT3G24170 857 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.003G178200 [exp] 882 / 0 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3) Potri.015G037800 [exp] 513 / 1e-178 AT3G54660 872 / 0.0 glutathione reductase (.1) Potri.008G100800 [exp] 181 / 5e-51 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.010G151400 [exp] 149 / 2e-39 AT3G17240 817 / 0.0 lipoamide dehydrogenase 2 (.1.2.3) Potri.008G107600 [exp] 143 / 1e-36 AT3G16950 877 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.010G142100 [exp] 142 / 2e-36 AT3G16950 895 / 0.0 lipoamide dehydrogenase 1 (.1.2) Potri.001G099600 [exp] 49 / 7e-06 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0608 [flax] [poplar] Reductase_C PF02852 [flax] [poplar] Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10011734 pacid=23165910 polypeptide=Lus10011734 locus=Lus10011734.g ID=Lus10011734.BGIv1.0 annot-version=v1.0 ATGGCTAGAAAGATGCTAATCGACGGAGAGCTGGGCCAGACCAATGCGGCTGACGAGGTTCACTATGATTTCGACTTGTTCGTCATTGGAGCTGGAAGTG GCGGTGTTCGTGCCTCCAGATTCTCCGCTAATTTTGGAGCTAAGAAGGTTGGGATTTGTGAGCTTCCTTTTCATCCTATCAGCTCCGAAGTGATTGGAGG AGTTGGTGGAACTTGTGTTATTCGTGGTTGTGTTCCCAAGAAGATATTGGTGTATGGTGCATCATTTGGAGGTGAACTTGAGGATGCAAGAAATTATGGA TGGGAATTGAGTGAAAACCTTGACTTCAACTGGAAAAAATTGTTGCAGAAGAAGACCGATGAAATACTCAGATTGAATGGAATTTACAAGCGGCTATTGT CGAACGCTGCAGTTAAATTGTATGAAGGAGAGGGTAGAGTTGTCGGTCCCAATGAAGTTGAAGTCACACAGTTAGACGGGACCAAATTACGTTACTCCGC TAAACATATACTGATTGCAACTGGAAGTAGGGCACATCGCCCTGCTATTCCAGGACAGGAGTTGGCAATAACTTCTGACGAGGCCTTGAGCTTGGAGGAA CTGCCTAAGCGTGCTGTGGTGCTTGGAGGAGGGTACATTGCTGTTGAGTTTGCTTCTATATGGCGTGGAATGGGTGCTACTGTAGATCTATTTTTCAGAA AGGAACTTCCATTGAGAGGGTTTGATGATGAAATGAGAGCAGTTGTTGCCAGAAATTTGGAGGGAAGGGGAATTAATTTGCATCCCCAAACAAATTTGAC AGAGTTGGTAAAAACTGAAGAAGGAATCAAAGTTCGCACAGATCATGGTGAAGAATTAATTGCAGATGTTGTACTCTTTGCTGCTGGAAGAATTCCAAAT TCGAAGAGATTGAATTTGGAAGCTGTAGGTGTTGAGGTTGATAAGATGGGGGCTATTAAGGTGAATGAGTACTCGCAAACAAACATACCTAGCATATGGG CCATCGGTGATGTTACAAATCGCATGAATCTTACACCTGTTGCCTTGATGGAGGGAACTAACTTTGCAAAAACTGTTTTTGCTGGGGAACCTACCAAGTC CGACTATGACAATATACCATGTGCTGTGTTTTGCATACCACCTCTTTCTGTAGTTGGGCTTAGCGAAGAGCAAGCGATAAAACAAGCAGATGGTGATATA CTAGTTTTCACTTCAAGCTTCAACCCTATGAGGAATACAATTTCTGGGCGACAAGAAAAGACAGTCATGAAGCTTGTTGTCGATGCTACTACTGATAAGG TGTTGGGAGCTTCCATGTGTGGGCCGGATGCAGCTGAAATTATGCAGGGCATTGCTATTGCGCTCAAGTGCGGAGCAACAAAGGCACAGTTTGACAGCAC GATTGGGATACATCCTTCTGCTGCGGAAGAATTTGTGACAATGCGATCAGTTAGCAGGCGCGTTGAAGGTGCTAAGAAACCAAAGACGAACCTATGA
AA sequence Show only first row Show all	>Lus10011734 pacid=23165910 polypeptide=Lus10011734 locus=Lus10011734.g ID=Lus10011734.BGIv1.0 annot-version=v1.0 MARKMLIDGELGQTNAADEVHYDFDLFVIGAGSGGVRASRFSANFGAKKVGICELPFHPISSEVIGGVGGTCVIRGCVPKKILVYGASFGGELEDARNYG WELSENLDFNWKKLLQKKTDEILRLNGIYKRLLSNAAVKLYEGEGRVVGPNEVEVTQLDGTKLRYSAKHILIATGSRAHRPAIPGQELAITSDEALSLEE LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPQTNLTELVKTEEGIKVRTDHGEELIADVVLFAAGRIPN SKRLNLEAVGVEVDKMGAIKVNEYSQTNIPSIWAIGDVTNRMNLTPVALMEGTNFAKTVFAGEPTKSDYDNIPCAVFCIPPLSVVGLSEEQAIKQADGDI LVFTSSFNPMRNTISGRQEKTVMKLVVDATTDKVLGASMCGPDAAEIMQGIAIALKCGATKAQFDSTIGIHPSAAEEFVTMRSVSRRVEGAKKPKTNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24170		ATGR1	glutathione-disulfide reductas...		Lus10011734 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	7.3	0.9176
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	13.9	0.8986
					Lus10033269 [exp]	19.5	0.9054
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	20.2	0.9000
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10026255 [exp]	27.2	0.8727
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	29.9	0.8842
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	30.1	0.8975
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	35.8	0.8966
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10007031 [exp]	36.2	0.8628
AT5G59590		UGT76E2	UDP-glucosyl transferase 76E2 ...		Lus10016460 [exp]	38.6	0.8814

Compare expression of checked genes

Lus10011734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.