Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33100 1339 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT3G03050 1167 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1164 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT4G38190 1139 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT1G02730 1063 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT1G32180 956 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 661 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 661 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G09870 655 / 0 CESA5 cellulose synthase 5 (.1) AT4G18780 655 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000755 [exp] 1705 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10009248 [exp] 1179 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10013851 [exp] 1121 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10022982 [exp] 1102 / 0 AT4G38190 1823 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1098 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10030453 [exp] 1080 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1078 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1046 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10026609 [exp] 1018 / 0 AT3G03050 1326 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177800 [exp] 1379 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1353 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.013G082200 [exp] 1187 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.019G049700 [exp] 1186 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.004G208800 [exp] 1159 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.009G170000 [exp] 1149 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.014G125100 [exp] 1062 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G097100 [exp] 1062 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1058 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.002G200300 [exp] 1049 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10011736 pacid=23165914 polypeptide=Lus10011736 locus=Lus10011736.g ID=Lus10011736.BGIv1.0 annot-version=v1.0 ATGTCCGCCTCCGGCCACAACAACGACTACAGCAACTACACCGTCATGTTGCCCCCTACCCCCGACAACCAACCCGGTTCCAAATCCGACAACAAACTCG ATGGCCCAAGCCCCCACAGTGGTTCCCGATTCAACGCCCCTCCTCCGGGTCGGACCTCCGCACCTTCTGGCGGATCCGGATCCAAGATGGACCGTCGGAT GTCGATCATGACCTCCTCTAACAACAATAAATCCATGCTCCTCAGAACACAGACAGGCGATTTCGACCACAACCGGTGGCTATTCGAGACCAGAGGCACG TACGGAGTCGGAAACGCCTATTGGACCGACGACCACTATGGCAGCGGGTCAGACATAGGACTTAGCATGTCCGATTTCATGGACAAGCCATGGAAGCCGT TGTCAAGAAAAGTCAAAGTCCCGCCTGGGATTCTCAGCCCATATAGATTGTTGATCGTGATTCGATTGGTGGTTCTGTTCTTCTTTCTCGGGTGGCGTCT CCAGAACCCGAATCGGGATGCTATGTGGCTGTGGGGGGTTTCGGTGGTGTGCGAGCTATGGTTCGCCTTCTCCTGGCTTCTTGACATTCTACCCAAATTC AATCCGATTAATCGAGCCACCGACCTGGTTGCTTTGAAGGATAAGTTCGAGCAGCCGTCCCCTTCTAACCCGACCGGTCGGTCCGACCTGCCTGGTGTGG ATGTGTTTGTTTCCATGGCTGATCCAGATAAAGAACCACCGCTGATTTGGGTACCATTTTGTCGGAAACACAAGATTGAACCGAGGAATCCAGACAGCTA CTTCAGCATGAAAAAAGACCCAACAAAGAACAAAAAACTACATGATTTTGTGAGGGATAGAAGGTGGATAAAGAGAGAATATGATGAGTTCAAAGTTAGA ATAAATGGACTTCCTGATGTGATACGCAAGCGAAGTGATGCGTTGAACATAAGAGAAGAGAGGAAGGAAAAAGCAATAGCGAGGGAGAAGAACGGAGGCA CATTACCAGCAGAAGGAGTGTCTGTACAGAAAGCAACTTGGATGGCCGACGGTACACATTGGCCAGGTACATGGTGGCAGTCAGCTCCCGACCATGCCAA AGGTGATCATGCTGGTATTGTACAGGTAATGAGCAAAGTTCCTGAGCCAGAACCCGTAATGGGAGGACCAGACGAGAAAACCATAGACTTCACTGGAGTT GACATCAGGGTCCCTATGTTTGTCTATGTATCGAGAGAGAAAAGACCTGGCTATGATCATAATAAGAAGGCTGGAGCAATGAACGCATTGGTCAGAGCTT CAGCTATCCTCTCTAATGGACCCTTCATTTTGAACTTGGATTGTGATCACTACTTCTACAACTCATTAGCCATAAGAGAAGGAATGTGTTTTATGATGGA TCGCAGTGGTGATAGAATTTGTTACGTCCAGTTTCCTCAACGGTTCGAAGGGATTGATCCTTCTGACCGATATGCTAATCACAACACAGTCTTCTTTGAT GGAAGCATGCGTGCACTTGATGGTATACAAGGTCCAGTTTATGTGGGAACCGGGTGCATGTTTCGAAGATATGCACTATACGGATTCCTGCCACCCAGGG CCAGTGAATACCTTGGAATGTTTGGGCGAATAAAGAGCAGAGCGCCAAGTGCTCCGGTCCACTTAGAAGATTCGGAGACAAACCCTTTAAACTCAGACCA TCCTGACCTTAATCTCCCTAAAGGGTTTGGCAACTCACAGATGTTCAACGAGTCCATAGCTGTGGCTGAGTACCAAGGAAGGCCACTTGCTGATCACATT TCAGTAAAGAACGGGAGGCCTCCTGGTGCATTATTGGCTCCACGTCCGCCTCTTGATGCTCCTACTGTTGCTGAGGCGGTCGCCGTCATCGCTTGCTGGT ACGAGGAGAAGACAGAATGGGGTGAGAAGATAGGGTGGATCTACGGGTCTGTGACAGAAGACGTGGTGACAGGCTACCGAATGCATAACCGAGGGTGGAG ATCGGTCTACTGTGTGACAAAGCGTGATGCATTTCGTGGCACCGCACCTATCAATCTAACAGACAGGCTGCACCAGGTGCTCCGATGGGCAACTGGATCG ATCGAAATATTCTTCTCAAAAAACAACCCACTCCTCGCCAGTAGTAGGCTCAAGTTCCGACAACGCATCGCCTATCTAAACGTTGGCTTTTACCCTTTCA CATCAATAGTCTTGGTGATCTACTGCTTTCTCCCAGCTTGGTGTCTTTTCACAGGAAGCTTCATCGTCCAGTCTCTAAACATAGCATTCCTGTGCTATCT CCTAGTCATCACCGTCACACTAACTCTCCTCTCCCTCCTGGAAGTGAAGTGGTCAGGGATTGAGCTGGAGGAGCTCTGGAGGAATGAGCAGTTTTGGGTG ATTGGAGGGACAAGTGCTCATCTTGCAGCAGTCATCCAAGGGCTTCTCAAATTGATAGGCGGGATAGAGATCTCGTTCACCTTGACATCGAAATCGGCTG GTGAAGACGAGGATGATGTCTATGCTGATCTCTATGTTGTGAAGTGGACGAGTTTGTTTATCGTGCCGCTGACAATCATAGTTGTGAACCTCACCGCGGT GATCATCGGGATCTCGAGGACGTTGTACAGTGTGATACCTCAATGGGGGAAGCTGTTTGGAGGGCTCTTCTTCAGCTTTTGGGTGGTGGCTCACATGTAT CCTTTTATCAAAGGCTTGTTGGGAAGGAGAGGAAGAGTTCCCACCATTGTATATGTATGGTCGGGTATTCTGTCTACCACATTGTCTTTGTTGTGGTTGT CCATCAGCCCTCCTACTGATAGCACCGCAAGTGGAAGTATTACTATATAA
AA sequence Show only first row Show all	>Lus10011736 pacid=23165914 polypeptide=Lus10011736 locus=Lus10011736.g ID=Lus10011736.BGIv1.0 annot-version=v1.0 MSASGHNNDYSNYTVMLPPTPDNQPGSKSDNKLDGPSPHSGSRFNAPPPGRTSAPSGGSGSKMDRRMSIMTSSNNNKSMLLRTQTGDFDHNRWLFETRGT YGVGNAYWTDDHYGSGSDIGLSMSDFMDKPWKPLSRKVKVPPGILSPYRLLIVIRLVVLFFFLGWRLQNPNRDAMWLWGVSVVCELWFAFSWLLDILPKF NPINRATDLVALKDKFEQPSPSNPTGRSDLPGVDVFVSMADPDKEPPLIWVPFCRKHKIEPRNPDSYFSMKKDPTKNKKLHDFVRDRRWIKREYDEFKVR INGLPDVIRKRSDALNIREERKEKAIAREKNGGTLPAEGVSVQKATWMADGTHWPGTWWQSAPDHAKGDHAGIVQVMSKVPEPEPVMGGPDEKTIDFTGV DIRVPMFVYVSREKRPGYDHNKKAGAMNALVRASAILSNGPFILNLDCDHYFYNSLAIREGMCFMMDRSGDRICYVQFPQRFEGIDPSDRYANHNTVFFD GSMRALDGIQGPVYVGTGCMFRRYALYGFLPPRASEYLGMFGRIKSRAPSAPVHLEDSETNPLNSDHPDLNLPKGFGNSQMFNESIAVAEYQGRPLADHI SVKNGRPPGALLAPRPPLDAPTVAEAVAVIACWYEEKTEWGEKIGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGS IEIFFSKNNPLLASSRLKFRQRIAYLNVGFYPFTSIVLVIYCFLPAWCLFTGSFIVQSLNIAFLCYLLVITVTLTLLSLLEVKWSGIELEELWRNEQFWV IGGTSAHLAAVIQGLLKLIGGIEISFTLTSKSAGEDEDDVYADLYVVKWTSLFIVPLTIIVVNLTAVIIGISRTLYSVIPQWGKLFGGLFFSFWVVAHMY PFIKGLLGRRGRVPTIVYVWSGILSTTLSLLWLSISPPTDSTASGSITI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33100		ATCSLD1	CELLULOSE-SYNTHASE LIKE D1, ce...		Lus10011736 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	7.0	0.7215
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10006704 [exp]	12.0	0.6484
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	21.5	0.6746
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	23.6	0.6786
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	24.1	0.6746
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	26.4	0.6746
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028002 [exp]	27.5	0.6149
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020851 [exp]	27.6	0.6322
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	28.7	0.6691
					Lus10028949 [exp]	30.9	0.6393

Compare expression of checked genes

Lus10011736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.