Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04760 324 / 4e-114 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT2G32670 308 / 9e-107 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04750 300 / 1e-104 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G33120 296 / 5e-103 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT4G15780 264 / 2e-90 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33110 255 / 6e-87 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT3G54300 240 / 8e-81 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT5G11150 122 / 1e-34 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 112 / 5e-31 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 112 / 6e-31 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000754 [exp] 400 / 2e-144 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 328 / 2e-115 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 326 / 6e-115 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 322 / 2e-113 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 320 / 1e-112 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 318 / 6e-112 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 304 / 3e-106 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 303 / 1e-105 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 297 / 2e-103 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177700 [exp] 311 / 4e-109 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.002G240900 [exp] 305 / 8e-107 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 305 / 2e-106 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.001G050400 [exp] 296 / 2e-103 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 296 / 6e-103 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 254 / 1e-86 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.010G239900 [exp] 253 / 1e-85 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 248 / 8e-84 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 117 / 1e-32 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.001G219200 [exp] 112 / 6e-31 AT5G22360 369 / 1e-131 vesicle-associated membrane protein 714 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10011737 pacid=23165896 polypeptide=Lus10011737 locus=Lus10011737.g ID=Lus10011737.BGIv1.0 annot-version=v1.0 ATGGCGGGGCAACAGACGTTGATCTACAGCTTTGTGGCTAGAGGGACGGTGATCTTAGCAGACTACACCCACTTTAGCGGCAATTTCACCACCATCGCCG CTCAATGCCTTCAAAAGCTCCCTTCTACCAATAACAAGTTCACCTACAATTGCGATGGCCACACCTTCAACTATCTCGTCGAAAATGGCTTCACCTACTG CTTGGTTGCTTCTGAATCGGCAGGAAGACAGATCCCGATTGGGTATTTGGAGAGGATTAAAGATGAGTTCAGCAACAAATATGGTGGCGGCAAAGCTTCT ACCGCAAAGGCTAATAGTCTCAAGAAAGAGTTTGGGCCAAAGCTCAAGGAACATATGCAGTACTGTGTGGATCATCCAGAAGAGATAAACAAAATGGCCA AAGTTAAGGCTCAGGTTACTGAGGTCAAAGGTGTTATGATGGAGAACATTGAGAAGGCACAAGACTTCAAACAACAAGGAACCAAGATAAAAAGAAAGAT GTGGTACGAGAACATGAAGATGAAACTCATCGTCTTTGGCATCTTCGCAGCACTAGTTCTTCTGGTTTGGCTATCCATTTGCCATGGCTTCAAGTGTCAC TAA
AA sequence Show only first row Show all	>Lus10011737 pacid=23165896 polypeptide=Lus10011737 locus=Lus10011737.g ID=Lus10011737.BGIv1.0 annot-version=v1.0 MAGQQTLIYSFVARGTVILADYTHFSGNFTTIAAQCLQKLPSTNNKFTYNCDGHTFNYLVENGFTYCLVASESAGRQIPIGYLERIKDEFSNKYGGGKAS TAKANSLKKEFGPKLKEHMQYCVDHPEEINKMAKVKAQVTEVKGVMMENIEKAQDFKQQGTKIKRKMWYENMKMKLIVFGIFAALVLLVWLSICHGFKCH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011737 [exp]	0	1
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10037650 [exp]	6.0	0.8246
AT5G62960			unknown protein		Lus10027692 [exp]	10.0	0.7864
AT3G02300			Regulator of chromosome conden...		Lus10030712 [exp]	10.7	0.7818
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	11.6	0.7744
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10037080 [exp]	11.7	0.7776
AT4G15450			Senescence/dehydration-associa...		Lus10011127 [exp]	12.7	0.7875
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	14.3	0.7944
AT5G22850			Eukaryotic aspartyl protease f...		Lus10005356 [exp]	19.7	0.7630
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	20.2	0.7668
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	26.7	0.7864

Compare expression of checked genes

Lus10011737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.