Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04770 389 / 8e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 358 / 9e-125 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 270 / 2e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 231 / 5e-73 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 204 / 2e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 112 / 1e-29 unknown protein AT1G49940 53 / 4e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000753 [exp] 579 / 0 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 380 / 3e-133 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 379 / 6e-126 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10028434 [exp] 266 / 3e-86 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 266 / 4e-86 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 266 / 5e-86 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 265 / 1e-85 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 243 / 2e-76 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008852 [exp] 229 / 5e-71 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177600 [exp] 447 / 7e-160 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 439 / 8e-157 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 399 / 6e-141 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 276 / 7e-90 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 272 / 2e-88 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 266 / 8e-84 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 262 / 3e-82 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 55 / 1e-09 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10011738 pacid=23165895 polypeptide=Lus10011738 locus=Lus10011738.g ID=Lus10011738.BGIv1.0 annot-version=v1.0 ATGCAAGAGATGACGAGTCAACAAAGGATATCAGAGAGGATTCCGAACGTAGATGTCGTGGCTGCTCCGTATCACGTCCTTCACAAGCTCCCCCCTGGCG ATGGCCCTTATGTTAGAGCTAAGCACGTTCAGCTAGTTGATAAAGATCCAGTGGGAGCAGTAGAATGGTTCCTGAAAGCAATCAGTTCGGGAGATAGAGT AGATAGTGCCCTCAAAGATATGGCGCTAGTGATGAAACAACAAGACAGATCCGAAGAAGCAATTGAAGCTATCAGGCGTTTTAGACATCTCTGCTCCAAG CAAGCTCAAGAGTCGCTGGACAATGTCCTCATTGACCTTTACAAGAAATGTGGGAAAATGGAGGAGCAGATAGAGCTATTGAAGCAGAAGCTTTGGATTA TTTACCAAGGAGATGCGTTCAATGGCAAGCCAACTAAGACGGCACGATCTCACGGCAGGAAGTTTCAGGTCACCGTCCAGCAAGAGACTTCTCGGATACT GGGGAACCTGGGTTGGGCATACATGCAGCTAGGCAACTATTCTGCCGCCGAAACAGTATACCTCAAAGCACAGCTAATTGACCCTGATGCCAACAAGGCC TGCAACATATCCCTGTGTCTCTTGAAGCAAATGCGATATGATGAAGCACGTTCTGTATTGGATGATGTTGTCAAAGGCAAGATATTGGGATACGATGACC CCAAGTCGAGGAGTCGAATCAAGGAGCTACTTGAAGAAGTGGAAATGTGCCAGTCCTCCTCTCGTGCACAAACCTCCTTTTCAGTTACATTAAGTTTGGA AGATGCATTTGCTGAGGGACTAGACCAGCTGATGGGGCATCTGACGCCGTATCGATCTAGGAGACTTCCAATTTTCGAAGAGATCTCTCCAGTGCGAGAC CAGTTAGCTTGTTGA
AA sequence Show only first row Show all	>Lus10011738 pacid=23165895 polypeptide=Lus10011738 locus=Lus10011738.g ID=Lus10011738.BGIv1.0 annot-version=v1.0 MQEMTSQQRISERIPNVDVVAAPYHVLHKLPPGDGPYVRAKHVQLVDKDPVGAVEWFLKAISSGDRVDSALKDMALVMKQQDRSEEAIEAIRRFRHLCSK QAQESLDNVLIDLYKKCGKMEEQIELLKQKLWIIYQGDAFNGKPTKTARSHGRKFQVTVQQETSRILGNLGWAYMQLGNYSAAETVYLKAQLIDPDANKA CNISLCLLKQMRYDEARSVLDDVVKGKILGYDDPKSRSRIKELLEEVEMCQSSSRAQTSFSVTLSLEDAFAEGLDQLMGHLTPYRSRRLPIFEEISPVRD QLAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10011738 [exp]	0	1
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023180 [exp]	1.0	0.8390
AT5G24660		LSU2	response to low sulfur 2 (.1)		Lus10015594 [exp]	2.0	0.7988
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	6.0	0.7822
AT4G21990		3-Apr, PRH-26, ...	PAPS REDUCTASE HOMOLOG 26, APS...		Lus10015560 [exp]	8.5	0.7710
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	10.4	0.7515
AT5G55980			serine-rich protein-related (....		Lus10043215 [exp]	12.1	0.7409
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004972 [exp]	17.7	0.7125
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	20.6	0.7309
AT1G04770			Tetratricopeptide repeat (TPR)...		Lus10000753 [exp]	21.1	0.7558
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	21.4	0.7299

Compare expression of checked genes

Lus10011738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.