Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026826 [exp] 72 / 9e-16 ND / Lus10022123 [exp] 62 / 3e-12 ND / Lus10010817 [exp] 60 / 5e-12 ND / Lus10006524 [exp] 60 / 9e-12 ND / Lus10025363 [exp] 62 / 1e-11 ND 39 / 0.002 Lus10032483 [exp] 61 / 1e-11 ND / Lus10020141 [exp] 63 / 2e-11 AT3G09510 50 / 1e-06 Ribonuclease H-like superfamily protein (.1) Lus10025367 [exp] 58 / 8e-11 ND / Lus10004830 [exp] 61 / 1e-10 AT1G17930 48 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011739 pacid=23165917 polypeptide=Lus10011739 locus=Lus10011739.g ID=Lus10011739.BGIv1.0 annot-version=v1.0 ATGTATTGGTATCGACGCCACTGCCACCCGCGCATCCTCTGCCTGCTCCTTGCTGGTGCTCTCGTGTCGACAGATATGGAGTACGATTCCAATGCTGAGT ATCTGGAGGCGGTCGAGCAGATGCGTTGCAGTGTTGCCGACATAAGTCCGATTGATATAATACCGACGGCGTTGGAAAGCTGGTTCGATTGGATACAACT TTCATGTTCATGTCGAGGCCAAATTTCGGCGAGAATAACCAGAAGGACCGGATTTCCGTCCGGGTGGTCTGACCGGACAGGAAACCGGTCCGTCCAGTCT GTTTGGTGGACGAAACACTGGTTAAACCACCCGGACGAAAATCTGATCCGTCCGGATGGTCTGACCGGACGGAAAATCGAAAGAACTCGAAGGATTCGAC TCCAACTGCTACCCCCTTTAATCGCAATCAAATTCGGTGGATTCCACCCACAAAAATCAAAGTCGGTTCGAAGGCATGGCTCATCCGATGGTTGCGTGTC TAGCCTATGGGGTGTACTTGAGGTGTTGAATCAAGGCACCTCTTCCGGTGGTTATAGATTTCCGATGAACGATTTAGAGGTTGGTTTTCTATCTCTGTTC TCCGGCTTTGATCCCTACATTCCGGTTTCCTTCCGAGTTTCGAGATCTAGCGTTCTTGTGGGTTTTGAGAGATTCTTGTGCGAAGAAGCGTTCCGAGTCC GACAATCACCATTACCAAAACGTCCGTTTCGTGGGTTCCTTTCATGA
AA sequence Show only first row Show all	>Lus10011739 pacid=23165917 polypeptide=Lus10011739 locus=Lus10011739.g ID=Lus10011739.BGIv1.0 annot-version=v1.0 MYWYRRHCHPRILCLLLAGALVSTDMEYDSNAEYLEAVEQMRCSVADISPIDIIPTALESWFDWIQLSCSCRGQISARITRRTGFPSGWSDRTGNRSVQS VWWTKHWLNHPDENLIRPDGLTGRKIERTRRIRLQLLPPLIAIKFGGFHPQKSKSVRRHGSSDGCVSSLWGVLEVLNQGTSSGGYRFPMNDLEVGFLSLF SGFDPYIPVSFRVSRSSVLVGFERFLCEEAFRVRQSPLPKRPFRGFLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011739 [exp]	0	1
AT5G57910			unknown protein		Lus10036255 [exp]	4.4	0.8209
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	11.0	0.7832
AT5G57910			unknown protein		Lus10022161 [exp]	12.0	0.7827
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	12.7	0.7919
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	13.4	0.7591
AT3G10530			Transducin/WD40 repeat-like su...		Lus10032289 [exp]	16.7	0.7659
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030598 [exp]	17.0	0.7393
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	25.1	0.7659
AT1G17930			Aminotransferase-like, plant m...		Lus10024265 [exp]	27.7	0.6685
					Lus10042279 [exp]	30.7	0.7778

Compare expression of checked genes

Lus10011739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.