Plant FIBer expression Database

Lus10011740 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24200 95 / 3e-24 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011742
[exp]
162 / 2e-48 AT3G24200 653 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Lus10000752
[exp]
161 / 2e-47 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G051200
[exp]
116 / 5e-32 AT3G24200 663 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
PFAM info
Representative CDS sequence
>Lus10011740 pacid=23165894 polypeptide=Lus10011740 locus=Lus10011740.g ID=Lus10011740.BGIv1.0 annot-version=v1.0
ATGAACCCGAAGCACTCATCAGATTTGGCAGTAATGAATGAGGATGATTTTGTGAAAGCTGTAAATAATGATCTGGACCATGGATATGACCCTCGTCCAA
AGTCGAGCTTCCCGAATGGTAGCGACAGGTTTTCTCTATTTGGAGGCAACTTAACCATGTGGACCAATGAATATGTTGAGGTACCACCAAAGGTGGTAAA
GCTGGTTTCGAAGAGAACAGTGCTTCCCCTGTCCTTAATGCATGATCACGACTATGTAGTGAAACGTGTTGTTCTTAGTTCATCCTCTAGCAGGTCAAGG
AGTTAA
AA sequence
>Lus10011740 pacid=23165894 polypeptide=Lus10011740 locus=Lus10011740.g ID=Lus10011740.BGIv1.0 annot-version=v1.0
MNPKHSSDLAVMNEDDFVKAVNNDLDHGYDPRPKSSFPNGSDRFSLFGGNLTMWTNEYVEVPPKVVKLVSKRTVLPLSLMHDHDYVVKRVVLSSSSSRSR
S

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G24200 FAD/NAD(P)-binding oxidoreduct... Lus10011740
[exp]
0 1
AT1G54730 Major facilitator superfamily ... Lus10029966
[exp]
2.4 0.9274
AT2G42130 Plastid-lipid associated prote... Lus10016263
[exp]
3.7 0.9181
AT2G47010 unknown protein Lus10000888
[exp]
5.1 0.8977
AT5G57740 XBAT32 XB3 ortholog 2 in Arabidopsis ... Lus10015503
[exp]
6.0 0.9000
AT2G16720 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAI... Lus10028435
[exp]
7.4 0.9111
AT2G29120 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, gluta... Lus10026913
[exp]
9.2 0.9154
AT1G54730 Major facilitator superfamily ... Lus10035354
[exp]
12.6 0.8863
AT4G17890 UBP20, AGD8 ARF-GAP domain 8 (.1.2) Lus10004125
[exp]
13.1 0.9053
AT4G03115 Mitochondrial substrate carrie... Lus10024769
[exp]
13.2 0.9074
AT1G14740 Protein of unknown function (D... Lus10030769
[exp]
14.4 0.9133

Lus10011740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.