Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24200 653 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000752 [exp] 1055 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10011740 [exp] 164 / 4e-48 AT3G24200 96 / 2e-24 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10009359 [exp] 44 / 0.0004 AT5G67030 888 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Lus10019342 [exp] 44 / 0.0005 AT5G67030 852 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051200 [exp] 761 / 0 AT3G24200 663 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Potri.007G044300 [exp] 44 / 0.0004 AT5G67030 919 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2) Potri.005G138400 [exp] 43 / 0.001 AT5G67030 925 / 0.0 NON-PHOTOCHEMICAL QUENCHING 2, IMPAIRED IN BABA-INDUCED STERILITY 3, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ABA DEFICIENT 1, zeaxanthin epoxidase (ZEP) (ABA1) (.1), zeaxanthin epoxidase (ZEP) (ABA1) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01494 [flax] [poplar] FAD_binding_3 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10011742 pacid=23165927 polypeptide=Lus10011742 locus=Lus10011742.g ID=Lus10011742.BGIv1.0 annot-version=v1.0 ATGAGCAATTCCGTTACCATTCTTCTTTACCCAAATAACTTTCAAACTAGGATATCTATGAAGCAACTTATGACACTCGGAGATTATATCGCCAAACTCT ATATTCCCCGTCACACTGTGCTTAAAGGCATGATGCACTTCCTGAATGTCCATCTCGATCAAAACGTGATAAATGGAACAAGTGGTTTGGGTTGGGCCGA ATCGCCAATCTTAGCCCAGACCAGGCTTCTTCTTCAACCGACTGTTGCTCGCAGCTACGTGCCGGAACTTCCTCCCTACTCTCTACCACCGCCTGCATCT TCCTCTTCCCTCACGCTCCTCTCCTTCCCTGCTTTTAGAGCTTCAACAATGAACAGACTGGTTGCTAGGAAGCTTTATTTCAATGGAAATTATCTCAAGG TTTCCTCGAGGAAAGGCTTCTGTAGCAGTGGCGAAGCTACAGTAGTATCTAGTGCATCCACAGGCCAGCTTAACCATCTACAGGAGCGCGAGAATCTCAG TGGAAATGATCAACCTTACGACATTGCTATTGTTGGGGGAGGCATGGTTGGGATGGCCCTAGCTTGTTCCTTAGCAACAAAGCCACTGACGAAGCACCTG AATGTTGCTATAATTGATAGCAATCCTGCTTTGGCGAATAAGCTAAGCATCAAAAGGGAGGATCCGCCTGATGCTAGGGTCAGCACGGTGACACCAGCAA CCATATCTTCATTCGAAGATGCCGGAGCTTGGCAGTACGTTCAACAACATCGCCATGCATATTTCGATAAGATGCAGGTCTGGGATTACACCGGCTTAGG ATATACAAAATACGATGCCCGTGACGTAAACAAAGATGTTTTAGGGTGTGTAGTAGAAAATCGAGTGCTCCATAGTTCTCTGTTATCACGTCTTGAGGAT ACAGGTTTTCGGAAGACAATCTACCCTTCAAAATTGGCTTCAATGGTTCGATATCCAAGTTCTACCATGAAGGTAGATGACAACACTAAGGAGGCATCGT ACATGAAAACAGGCTTGGTGAAGCTAGAAATGAGTGATGGCAGCAGCCTGTACACGAAATTGGTGGTTGGATCTGATGGGTCCAAGTCGCAAGTAAGGAA CCTAGCTGGATTTAAAACAACTGGGTGGCACTACTCACAGAATGCCATCATCTGTACTGTGGAACATTCAGTTGAAAATCACACTGCCTGGCAACGGTTT TTACCTGATGGCCCAATTGCACTTTTGCCTATAGGGGATAATTTTAGCAATATTGTTTGGACCATGAACCCGAAGCACTCATCAGATTTGACAGTAATGA ATGAGGATGATTTTGTGAAAGCTGTAAATAATGCTCTGGACCATGGATATGGCCCTCGTCCAAAGTCGAGCTTCCCGAATGGTAGCGACAGGTTTTCTCT ATTTGGAGGCAACTTAACCATGTCGGCCAATGAATCCTTTGAGGTACCACCAAAGGTGGTAAAGCTGGCTTCGAAGAGAACGGCGTTTCCCCTGTCCTTA ATGCATGCTAATGACTATGTAGCGAAACGTATTGTTCTTATTGGTGATGCTGCACACGCTGTTCATCCTCTAGCAGGCCAAGGAGTTAATTTGGGTTTTG GAGATGCATTTGCTCTTTCAAGAATCATCAGCGAGGGCATTGCAGTTGGAGTGGACATTGGGGAGGTGTCCCAGTTGAGAAAGTACGAAAGAGAAAGGAA ACCAGCAAACGTGGCGATGATGGCCGTACTGGATGGTTTTCAGAAGCTATACTCTGTGGATTTTGGGCCTCTTAATGTGTTACGGGCTGCTGCTTTCAAT GCTGTAAATAGCTTTTCACCGCTGAAGAGGAGTATCATCTCGTATGCCTCCGGAGAACAGCGTCTACCCATTGTCTCTTGA
AA sequence Show only first row Show all	>Lus10011742 pacid=23165927 polypeptide=Lus10011742 locus=Lus10011742.g ID=Lus10011742.BGIv1.0 annot-version=v1.0 MSNSVTILLYPNNFQTRISMKQLMTLGDYIAKLYIPRHTVLKGMMHFLNVHLDQNVINGTSGLGWAESPILAQTRLLLQPTVARSYVPELPPYSLPPPAS SSSLTLLSFPAFRASTMNRLVARKLYFNGNYLKVSSRKGFCSSGEATVVSSASTGQLNHLQERENLSGNDQPYDIAIVGGGMVGMALACSLATKPLTKHL NVAIIDSNPALANKLSIKREDPPDARVSTVTPATISSFEDAGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYDARDVNKDVLGCVVENRVLHSSLLSRLED TGFRKTIYPSKLASMVRYPSSTMKVDDNTKEASYMKTGLVKLEMSDGSSLYTKLVVGSDGSKSQVRNLAGFKTTGWHYSQNAIICTVEHSVENHTAWQRF LPDGPIALLPIGDNFSNIVWTMNPKHSSDLTVMNEDDFVKAVNNALDHGYGPRPKSSFPNGSDRFSLFGGNLTMSANESFEVPPKVVKLASKRTAFPLSL MHANDYVAKRIVLIGDAAHAVHPLAGQGVNLGFGDAFALSRIISEGIAVGVDIGEVSQLRKYERERKPANVAMMAVLDGFQKLYSVDFGPLNVLRAAAFN AVNSFSPLKRSIISYASGEQRLPIVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011742 [exp]	0	1
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	8.7	0.7946
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10028602 [exp]	10.4	0.7910
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10024525 [exp]	14.1	0.8087
AT5G37790			Protein kinase superfamily pro...		Lus10033588 [exp]	15.6	0.7916
AT1G51310			transferases;tRNA (5-methylami...		Lus10038747 [exp]	17.3	0.7790
AT5G53770			Nucleotidyltransferase family ...		Lus10032691 [exp]	23.0	0.7797
AT1G67590			Remorin family protein (.1.2)		Lus10041239 [exp]	24.0	0.7331
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10018188 [exp]	25.5	0.7665
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	28.3	0.7900
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	35.9	0.7628

Compare expression of checked genes

Lus10011742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.