Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04780 782 / 0 Ankyrin repeat family protein (.1) AT3G24210 686 / 0 Ankyrin repeat family protein (.1) AT3G04470 603 / 0 Ankyrin repeat family protein (.1) AT1G62050 438 / 2e-146 Ankyrin repeat family protein (.1) AT1G11740 360 / 7e-116 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000752 [exp] 1103 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10008195 [exp] 607 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 573 / 0 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10002942 [exp] 428 / 4e-143 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 384 / 1e-125 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10027961 [exp] 340 / 1e-113 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10003524 [exp] 304 / 1e-96 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1) Lus10027960 [exp] 234 / 2e-70 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051400 [exp] 947 / 0 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 933 / 0 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.019G019700 [exp] 620 / 0 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 609 / 0 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 351 / 5e-113 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 343 / 1e-109 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Lus10011743 pacid=23165899 polypeptide=Lus10011743 locus=Lus10011743.g ID=Lus10011743.BGIv1.0 annot-version=v1.0 ATGGCGGGTATTGATGTTTCGAAGTATGCACATAGTCCTGTGCACAGGGCTATTGCAACCAGGGATTATGCTGATCTTAAGAAGATATTAGCAGGGTTAC CACGGCTTTGCAACCCAGCTGACATTCGGACCGAGTCAACTTCAATGGCTGAAGAAGAGAAGGCTGAAGCCATCTCTTCTGTTATTGATAGGCGTGATGT CCCAAACCGTGAGACCCCTCTTCATTTGGCTGTCAAATTGGGTGACGAGACTGCTGCAGAGATGCTCATGGTTGCTGGTGCAGATTGGAGCTTACAAAAT GAGCATGGTTGGAGTGCTCTTCAAGAAGCAATTTGTAACAAAGAAGAGGCCATTGCGATGGCAATTGTTAGGCACTACCAGCCATTGGCTTGGGCCAAAT GGTGTCGGAGGTTGCCTCGTTTGATCGGGACCATGCATCGGATGAGGGACTTCTATATGGAGATCACATTCCACTTTGACAGTTCTGTGATTCCTTTTAT CTCAAGGATTGCTCCTTCAGACACTTACAAGATCTGGAAGAGGGGTGCAAACTTGAGAGCAGATATGACCTTGGCAGGTTTCGATGGTTTTAGGATTCAG CGTTCTAATCAGAGTATCCTTTTCCTTGGGGATGGATCTGAGGATGGGAAAGTGCCTCCTGGCACACTTTGTATGACCACTCATAAAGATAAAGAAGTGA TGAATGCTCTAGATGGTGCTGCTTCTCCTGGAACTGATGAAGAGGTTAAACAAGAAGTGAATGTTATGTCTCAAACAAATATTTTTCGTCCAGGAATTGA TGTAACCCAGGCAGTCCTTTTGCCACAGTTAACTTGGAGGAGGCAGGAGAAAACGGAAACTATTGGTGAATGGAAAGGTAAAGTTTATGATATGCATAAT GTGGTTATTAGCATCAAGTCAAGGAAGGTCCCGGGGGCAATGTCAGATGATGAGTTCTTTTCGTCTAGCAATGAGAATGGAACAGAAAGTGAGGAGGAGC TTATTGATGGTAATTTGACAGAAGAAGAAAGAAAGCAACTTGAACTTGCACTTAAATTGGATTCTTCAGAAATGAGCCATGAGAATGGTGAACATAGAGA TATTCCTATTGAGGATGGTGATGAGTTTAGAAATGGAGAGACTAAGCAGGAGAAGAAAGGTTGGTTCGGGGGATGGAGGAAACGTGATGAGAAAGGTAAA TGGCATAAGAAAATAGTTGCACCTAGAAGTTCTCTGTGTGTAGAAGAAAAGGTAAGCAACCTTCTTGGGGACTCCCCGCCTGCTGGACAGCCCAAACCAG CTAGACATTCTGTGGAAGTAATTGTTGGAGATGAGCACAGAAAAGGAAGAGAACTGAAGACTTCTACTTCAACTAGTACTGATCATCGGTGCAAGGAAGT ATGTCGTGAAAACGAGTATAAGAAAGGTTTGAGGCCAACACTGTGGCTGTCTCCCACCTTCCCATTGAAAACTGATGAAATTCTCCCATTGCTTGACATC CTTGCAAGCAAAGTTAAGGCAATTCGCCGATTACGAGATCTACTAACCACAAAACTTCCTCTGGGAACATTTCCTGTCAAGGTTGCAATCCCAGTTATTC CTACAGTTAGAGTAGTTATTACATTTACAAAGTTTGAAGAGCTAGAGCCGTTGGATGAATTTGCTACTCCACCATCGAGCCCGACACCAGGAGGCAGAGA GAGCCATGCGGGGATACAACCACCGGCAAGTACGTCCTCGTGGTTTCAGTGGATTAAGGCGCCATACCAACAAAGTAACTCGTCAAATGGTTATTCTAGC GGTAGGCTAGAGACCCTCCAAGACCCATTTGCCATCCCCTCAAATTACACTTGGGTTACAGCCGAAGCCAAAAAAAAGAAGGCGCAGGAGAAGAACAAAT TGAGAAAAGCTAGAAATCAGAGTTGA
AA sequence Show only first row Show all	>Lus10011743 pacid=23165899 polypeptide=Lus10011743 locus=Lus10011743.g ID=Lus10011743.BGIv1.0 annot-version=v1.0 MAGIDVSKYAHSPVHRAIATRDYADLKKILAGLPRLCNPADIRTESTSMAEEEKAEAISSVIDRRDVPNRETPLHLAVKLGDETAAEMLMVAGADWSLQN EHGWSALQEAICNKEEAIAMAIVRHYQPLAWAKWCRRLPRLIGTMHRMRDFYMEITFHFDSSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQ RSNQSILFLGDGSEDGKVPPGTLCMTTHKDKEVMNALDGAASPGTDEEVKQEVNVMSQTNIFRPGIDVTQAVLLPQLTWRRQEKTETIGEWKGKVYDMHN VVISIKSRKVPGAMSDDEFFSSSNENGTESEEELIDGNLTEEERKQLELALKLDSSEMSHENGEHRDIPIEDGDEFRNGETKQEKKGWFGGWRKRDEKGK WHKKIVAPRSSLCVEEKVSNLLGDSPPAGQPKPARHSVEVIVGDEHRKGRELKTSTSTSTDHRCKEVCRENEYKKGLRPTLWLSPTFPLKTDEILPLLDI LASKVKAIRRLRDLLTTKLPLGTFPVKVAIPVIPTVRVVITFTKFEELEPLDEFATPPSSPTPGGRESHAGIQPPASTSSWFQWIKAPYQQSNSSNGYSS GRLETLQDPFAIPSNYTWVTAEAKKKKAQEKNKLRKARNQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	0	1
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10015504 [exp]	1.4	0.9035
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10020046 [exp]	2.4	0.8898
AT3G24530			AAA-type ATPase family protein...		Lus10034913 [exp]	2.6	0.8754
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	3.7	0.8951
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	4.0	0.8672
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10034940 [exp]	4.2	0.8756
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	7.4	0.8641
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	8.4	0.8774
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	8.5	0.8793
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10034274 [exp]	8.7	0.8454

Compare expression of checked genes

Lus10011743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.