Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 283 / 3e-96 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G34850 125 / 4e-35 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT4G00040 125 / 6e-35 Chalcone and stilbene synthase family protein (.1) AT1G02050 100 / 9e-26 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT1G71160 45 / 4e-06 KCS7 3-ketoacyl-CoA synthase 7 (.1) AT5G43760 42 / 5e-05 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT1G01120 42 / 5e-05 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT1G04220 42 / 6e-05 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT2G16280 42 / 7e-05 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G68530 41 / 0.0001 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023670 [exp] 310 / 8e-106 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 280 / 5e-96 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10012586 [exp] 217 / 1e-71 AT5G13930 230 / 1e-73 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 215 / 2e-69 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 213 / 7e-69 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 209 / 2e-67 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 132 / 2e-37 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 129 / 2e-36 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 122 / 9e-34 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051600 [exp] 296 / 2e-101 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 294 / 9e-101 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 292 / 6e-100 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 292 / 6e-100 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 288 / 3e-98 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 282 / 5e-96 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 202 / 1e-65 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 191 / 3e-60 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 179 / 8e-56 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.002G141400 [exp] 130 / 1e-36 AT1G02050 618 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011744 pacid=23165913 polypeptide=Lus10011744 locus=Lus10011744.g ID=Lus10011744.BGIv1.0 annot-version=v1.0 ATGTTTGAAATTGTGTCCGCAGCCCAGACCATCCTGCCCGATAGTGAAGGAGCTATCGACGGACACCTTCGTGAAGTGGGGTTGACTTTCCACCTTCTGA AAGATGTCCCCGGGCTGATTTCGAAGAACATTGAGAAGAGCTTGGTGGAGGCGTTTAAGCCTTTGGGGATATCGGATTGGAACTCGCTTTTCTGGATAGC TCATCCGGGTGGCCCGGCGATTCTGGACCAAGTGGAGGCTAAATTGAACCTCAAGGAGGAGAAACTGCGAGCCACGAGGCAGGTTCTGGCTGATTATGGT AACATGTCGAGTGCTTGTGTGTTGTTCATATTGGATGAGATGAGGAAGAAATCTGCTGCGGATGGGTTGCAGACCACTGGTGAAGGGCTTGATTGGGGGG TTCTCTTTGGATTCGGGCCTGGCCTTACTGTGGAGACTGTAGTCCTTCACAGTGTGGCTGTTTGA
AA sequence Show only first row Show all	>Lus10011744 pacid=23165913 polypeptide=Lus10011744 locus=Lus10011744.g ID=Lus10011744.BGIv1.0 annot-version=v1.0 MFEIVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLNLKEEKLRATRQVLADYG NMSSACVLFILDEMRKKSAADGLQTTGEGLDWGVLFGFGPGLTVETVVLHSVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011744 [exp]	0	1
AT1G27060			Regulator of chromosome conden...		Lus10012474 [exp]	17.2	0.5370
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10023670 [exp]	19.3	0.5373
AT3G28720			unknown protein		Lus10001710 [exp]	24.8	0.4842
AT4G02250			Plant invertase/pectin methyle...		Lus10008201 [exp]	27.4	0.5185
AT5G45840			Leucine-rich repeat protein ki...		Lus10025400 [exp]	84.8	0.4901
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011745 [exp]	93.2	0.4832
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10014134 [exp]	115.7	0.4634
AT5G59120		ATSBT4.13	subtilase 4.13 (.1)		Lus10000434 [exp]	118.2	0.4512
AT3G47040			Glycosyl hydrolase family prot...		Lus10000391 [exp]	168.4	0.4518
AT5G57015		CKL12	casein kinase I-like 12 (.1)		Lus10008472 [exp]	184.6	0.4477

Compare expression of checked genes

Lus10011744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.