Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 389 / 6e-137 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT1G02050 154 / 5e-45 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT4G00040 153 / 1e-44 Chalcone and stilbene synthase family protein (.1) AT4G34850 152 / 2e-44 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023670 [exp] 454 / 1e-161 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 324 / 3e-111 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 320 / 2e-109 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011746 [exp] 304 / 2e-103 AT5G13930 524 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10012586 [exp] 222 / 1e-72 AT5G13930 230 / 1e-73 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 162 / 3e-48 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 162 / 4e-48 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 161 / 2e-47 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 157 / 3e-46 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G051500 [exp] 418 / 2e-148 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 417 / 4e-148 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 414 / 7e-147 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 412 / 5e-146 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 402 / 4e-142 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176700 [exp] 401 / 1e-141 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 336 / 4e-116 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 309 / 2e-105 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 191 / 5e-60 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 155 / 2e-45 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011745 pacid=23165932 polypeptide=Lus10011745 locus=Lus10011745.g ID=Lus10011745.BGIv1.0 annot-version=v1.0 ATGTCGACTATCACCGTGGATGAAGTACGCAAGGCCCAACGTGCACAAGGTCCCGCCACCGTCCTCGCCATCGGAACCGCCACTCCTGCCAACTGCTTCG ATCAAAGCACCTACCCTGATTACTACTTCCGTATTACCAACAGCGAGCACAAGACTGAGCTCAAGGAGAAGTTCAAGCGCATGTGCGAGAAGTCGATGAT CAAGAAACGTTACATGCACTTGACGGAAGAGTTCCTCAAGGATAATCCGACCATGTGTGCCTACATGGCAAATTCCCTCGACGCTCGCCAAGACGTCGTC GTCCCTGAAGTTCCAAAGCTAGGAAAAGAAGCTGCCACAAAAGCCATCAAGGAATGGGGACAGCCCAAATCCAAAATCACCCACCTCATCTTCTGCACCA CCAGTGGGGTCGACATGCCAGGCGCCGACTACCAGCTCACCAAGCTGTTGGCCCTCCGCCCGTCGGTGAAGCGCTTCATGATGTACCAACAAGGCTGCTT CGCCGGTGGCACGGTACTCCGCCTCGCCAAGGACCTCGCCGAGAACAACAAGGGTGCACGCGTCCTCGTCGTGTGTTCCGAAATAACCGCCGTCACCTTC CGTGGGCCGAGCGATGCCCATCTAGACAGTCTCGTGGGCCAGGCCTTGTTCGGCGACTGA
AA sequence Show only first row Show all	>Lus10011745 pacid=23165932 polypeptide=Lus10011745 locus=Lus10011745.g ID=Lus10011745.BGIv1.0 annot-version=v1.0 MSTITVDEVRKAQRAQGPATVLAIGTATPANCFDQSTYPDYYFRITNSEHKTELKEKFKRMCEKSMIKKRYMHLTEEFLKDNPTMCAYMANSLDARQDVV VPEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLALRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTF RGPSDAHLDSLVGQALFGD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011745 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10023670 [exp]	1.0	0.9760
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	4.9	0.9586
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	6.0	0.9586
AT4G02250			Plant invertase/pectin methyle...		Lus10008201 [exp]	6.5	0.8334
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	6.7	0.9026
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	6.9	0.9586
					Lus10005297 [exp]	7.7	0.9586
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	8.4	0.9308
					Lus10013260 [exp]	8.5	0.9586
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	9.2	0.9586

Compare expression of checked genes

Lus10011745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.