Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13930 523 / 0 ATCHS, TT4, CHS TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) AT4G34850 300 / 5e-99 LAP5 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) AT4G00040 271 / 8e-88 Chalcone and stilbene synthase family protein (.1) AT1G02050 264 / 3e-85 LAP6 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) AT3G52160 59 / 2e-09 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT1G71160 50 / 2e-06 KCS7 3-ketoacyl-CoA synthase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023670 [exp] 546 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10031622 [exp] 500 / 7e-178 AT5G13930 526 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10033717 [exp] 499 / 2e-177 AT5G13930 518 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10041508 [exp] 354 / 3e-121 AT5G13930 473 / 5e-168 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10011745 [exp] 304 / 4e-103 AT5G13930 389 / 6e-137 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Lus10026286 [exp] 297 / 3e-98 AT4G34850 650 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10042388 [exp] 292 / 5e-96 AT4G34850 636 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1) Lus10039904 [exp] 270 / 3e-87 AT1G02050 577 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1) Lus10002187 [exp] 266 / 7e-86 AT1G02050 576 / 0.0 LESS ADHESIVE POLLEN 6, Chalcone and stilbene synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176700 [exp] 535 / 0 AT5G13930 684 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051500 [exp] 534 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.014G145100 [exp] 534 / 0 AT5G13930 679 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176800 [exp] 532 / 0 AT5G13930 693 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G051600 [exp] 531 / 0 AT5G13930 692 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.003G176900 [exp] 531 / 0 AT5G13930 694 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.001G028600 [exp] 473 / 1e-167 AT5G13930 510 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.012G138800 [exp] 456 / 1e-160 AT5G13930 531 / 0.0 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.005G175200 [exp] 379 / 1e-131 AT5G13930 425 / 2e-149 TRANSPARENT TESTA 4, CHALCONE SYNTHASE, Chalcone and stilbene synthase family protein (.1) Potri.009G128800 [exp] 298 / 1e-98 AT4G34850 631 / 0.0 LESS ADHESIVE POLLEN 5, Chalcone and stilbene synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00195 [flax] [poplar] Chal_sti_synt_N Chalcone and stilbene synthases, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011746 pacid=23165898 polypeptide=Lus10011746 locus=Lus10011746.g ID=Lus10011746.BGIv1.0 annot-version=v1.0 ATGGTGAAGGAAAATGCAGGAAGTGCCAGCATCCTTGCCATTGGAACATCAAATCCTTCCAACTGTGTTCTTCAGAGCAGTTACCCAGATTACTATTTCC GGGTCACCAACGCACAACACCGCACCGACCTCATCCCCAACTTCACCCGCATCTGTGAAAACTCGAAAATAAAGAAGCGTTATCTACATTTAACTGAGCA TCTCATTCAAAAGCACCCAAATCTGGCTTCCTACATGGCACCTTCTTTGGACATTCGACAAGACATGGTGGTAGGTGAGGTCCCAAAACTAGGAAAACAA GCGGCCACAAAAGCCATCGAAGAATGGGCCCAACCCAAGTCCAAAATCACTCACTTGATCTTCAGCACCAGCACTGGCGCCCACATGCCAGGAGCAGATT ATCAACTCACCAAACTCATGGCCCTCGACCCATCCGTCAATCGCTTCATGATCTACCAACAGGGATGCTTCGGTGGCGGCACTGGCCTCCGCCTCGCCAA GGACATTGCCGAGAGCAACAGAGGTGCTCGAATCCTCGTGGTTTGGTCCGAGATAACCACCATCGGGTTTCGTGGACCACCGCCCGATTTCGAATCGGAC GTCTCCACTCTTGTGGGCCAGGCCATATTCGGGGATGGTGCGGCTGCCGTCATAGTTGGGTCGGATCCAGATCTCGAGATAGAAAAGCCCTTATTTGAAA TTGTGTCAACGACCCAGACTATTGTGCCGGATTCGGTTGGAGCGATAGAAGGGTACACTAGAGAAGCGGGGCTGGTGTATTTCTTGTCCAAGAGGTTACC GGACCTTGTGTCCAAGAACGTTGAGAAATGCGTGATGGAGGCGTTCGGGGCTTTGGGGTTGAGTTTAGACTGGAACTCGATATTCTGGGCAGTGCATCCA GGTGGGCCTAAGATTCTGGACAGGATGGAGATGGAGCTGAATCTCGAAGCTGAGAAGCTAAGGGCTACAAGGCATGTGTTGGCGGAGTACGGGAACATGT GGAGTGGAAGTGTGATTTTTGTGCTGGATGAAATGAGAAACAAGTCTATGGAGAACGAGATGGGTACAACTGGAGAAGGGTTGGAATGGGGAGTGCTGCT TGGATTTGGGCCTGGGCTTACTGTCGAGACTGTGGTTCTACGAAGTGTCCCCACCGATTAG
AA sequence Show only first row Show all	>Lus10011746 pacid=23165898 polypeptide=Lus10011746 locus=Lus10011746.g ID=Lus10011746.BGIv1.0 annot-version=v1.0 MVKENAGSASILAIGTSNPSNCVLQSSYPDYYFRVTNAQHRTDLIPNFTRICENSKIKKRYLHLTEHLIQKHPNLASYMAPSLDIRQDMVVGEVPKLGKQ AATKAIEEWAQPKSKITHLIFSTSTGAHMPGADYQLTKLMALDPSVNRFMIYQQGCFGGGTGLRLAKDIAESNRGARILVVWSEITTIGFRGPPPDFESD VSTLVGQAIFGDGAAAVIVGSDPDLEIEKPLFEIVSTTQTIVPDSVGAIEGYTREAGLVYFLSKRLPDLVSKNVEKCVMEAFGALGLSLDWNSIFWAVHP GGPKILDRMEMELNLEAEKLRATRHVLAEYGNMWSGSVIFVLDEMRNKSMENEMGTTGEGLEWGVLLGFGPGLTVETVVLRSVPTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	0	1
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	1.0	0.9913
AT3G19990			unknown protein		Lus10028680 [exp]	3.2	0.9893
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	3.5	0.9885
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	4.0	0.9878
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10002551 [exp]	5.9	0.9823
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	6.0	0.9822
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	7.0	0.9818
AT1G06980			unknown protein		Lus10026407 [exp]	7.1	0.9691
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	7.7	0.9674
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10010404 [exp]	7.7	0.9575

Compare expression of checked genes

Lus10011746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.