Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04790 153 / 3e-39 RING/U-box superfamily protein (.1) AT2G01150 47 / 4e-06 RHA2B RING-H2 finger protein 2B (.1) AT3G55530 48 / 1e-05 SDIR1 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) AT1G14200 43 / 0.0002 RING/U-box superfamily protein (.1) AT1G26800 43 / 0.0002 RING/U-box superfamily protein (.1) AT5G01980 44 / 0.0003 RING/U-box superfamily protein (.1) AT2G15580 43 / 0.0003 RING/U-box superfamily protein (.1.2) AT1G71980 43 / 0.0005 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023671 [exp] 628 / 0 AT1G04790 232 / 7e-67 RING/U-box superfamily protein (.1) Lus10006074 [exp] 47 / 3e-05 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 47 / 4e-05 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10014823 [exp] 47 / 5e-05 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 47 / 6e-05 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10031422 [exp] 45 / 9e-05 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176500 [exp] 215 / 2e-60 AT1G04790 264 / 2e-78 RING/U-box superfamily protein (.1) Potri.010G201500 [exp] 48 / 9e-06 AT3G55530 310 / 2e-106 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 47 / 2e-05 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 47 / 2e-05 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.013G111500 [exp] 45 / 9e-05 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.019G082500 [exp] 44 / 0.0003 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.004G122000 [exp] 42 / 0.0004 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011747 pacid=23165905 polypeptide=Lus10011747 locus=Lus10011747.g ID=Lus10011747.BGIv1.0 annot-version=v1.0 ATGGAGCAAGTAGACATTGATAAGGTCATAGAAATACCCGATACTCCTGATAGAGTATCTGGGAGGCAGATCAATGGCTCTCACCTTGGTAGAACAACTG GGTCATCAAGTGCCAGTCGGTCAAGAAATTCTGATATCATGAATATAGAGAGATTTAATCGGTTAGGGATCAGGAATCAGGTAGCAGATGAAAAAGTTTC TCATAGAAACAAGCATGCATGCCCTGAAAGAAATCCAATCATTATCGATGAACCTGAACCATGCGGTATGCGTACTACATCCCGTGCAGAGAACTCTCAT CCTTCTGAGAATGCTTTGTTATTCAGAAGAACAGCAAGGGTCCAAAATACCAGGCCTGTAAGTAGGCAATCTAGGGGAGCAACACATACGGACAAAGGAA AAGCTTTGTGTACCAAGATTCCTTCTAAATCCCATGCTGGCAGAGAAAATAAAACAAACGTAAATTTGAGCTTTCCGAGTGAGCATGGCCGCATATTAAA CATGGATTTTCCTTGTGGAGCATCGAATAGTCTGCCCTCTCAAGCTAGAGGTAAGGGTCAAATGTCATCCAGTAGTGCCTCATCGCTGTCTCCTGTCTCC TCAAGAATACTTAACAGTGCTTCTAAAGGCAAGGAGAAAATAGAAGTTGGTCCAGTCAATGGTTCTTTTGCTACTTCAAATCCAGAGAGAGCAATTGATG TGTCCAGCAATTCTCAGGATGAAGCTAACGGGAATATGTCTACTTCTCATCCATCTGGTACCTCCTCAAGGGTTATAGGGAGAAAACGACTTGTGCGCAA TGGATGTATTTCTCCATATAACATAGCCAATAGGGCCCAACGACTAACTGAAGATTGCCAAGTTGGTTCTGGCAGTTCTGAAACAAATCCACCCCATCAG ATTTCTTCCAATGATCCATCTCATGTGGATATCAGGAACATAGTTGCCGATGACAACGACACTTCCAGTTTCTTGCAGATGACACGCCGTAACCATTCTA CTCAAAATGGACTTGTATCGGCAGCTAGCCGTGCATCTTTAAGCAGCCCGGTGTTTGGAAATGGTGTGGCCAATGCAGATAGCCTGATGAACAGAGTCAA ACCAACGGACGTCAGGTGGTTGGGGGCAAAAGGGGAAAGAGATTTTGTGGATGCTGATGAATTGGAAGCCAGGGCAAGGCAATTAGAAGCGGATGAGATG CTGGCCCGTGAACTTCAGGAACAATTGTACCATGAAATGCCAGTATACGGGGAAGGCGAGACTGATGAGAGTATAGCATGGAATTGGGCAGTAAACCAGG AGGAAGATGTCCGCCCTAGTGCTTCCACCAATAATCAGGCTGCGTTACCTATGGGAAGGCAAACACAGCCTCGGGCTCAAGCACAGGCCCGTCAGAATCC TCCAATCAGAAGAGGAACACAGGCTCGAGGCTCCACTTCTAGAGTGTCACTGTTGAGGAATCGTTTTAACCGATCTATTACAAATGGACCGAGAAGGAGG GCCCATGCTCCTGTAACTTTATTTAGAGACAGGAATCTCCAGTTCCCTCTGGACATGGATCTAGATATGAGGATCGATATTTTGGAAGCTTTGGAGGCTG CAGTTGAAGACTCAGATTTTGACACAAGACACATCATGAATCTTCAGCGTGATTTCAACGAAAATGATTATGATATGTTGTTGTCCCTTGATGAGAACAA TGGACGACAAGGTGCATCTGCCAATCAAATTAACTGTTTGCCAGAGTCTGTAGTACAGTCCGACAACTTTGCTGAGAATTGTGCTATATGCCTTGAAACT CCTTCGATTGGTGAAACCATCCGTCATCTCCCTTGCTTCCATAAATTTCATAAAGATCATGAAGGTTGGACGAGGCACCTAGCAGCTGGTGTTACATCTC TCGTGTAA
AA sequence Show only first row Show all	>Lus10011747 pacid=23165905 polypeptide=Lus10011747 locus=Lus10011747.g ID=Lus10011747.BGIv1.0 annot-version=v1.0 MEQVDIDKVIEIPDTPDRVSGRQINGSHLGRTTGSSSASRSRNSDIMNIERFNRLGIRNQVADEKVSHRNKHACPERNPIIIDEPEPCGMRTTSRAENSH PSENALLFRRTARVQNTRPVSRQSRGATHTDKGKALCTKIPSKSHAGRENKTNVNLSFPSEHGRILNMDFPCGASNSLPSQARGKGQMSSSSASSLSPVS SRILNSASKGKEKIEVGPVNGSFATSNPERAIDVSSNSQDEANGNMSTSHPSGTSSRVIGRKRLVRNGCISPYNIANRAQRLTEDCQVGSGSSETNPPHQ ISSNDPSHVDIRNIVADDNDTSSFLQMTRRNHSTQNGLVSAASRASLSSPVFGNGVANADSLMNRVKPTDVRWLGAKGERDFVDADELEARARQLEADEM LARELQEQLYHEMPVYGEGETDESIAWNWAVNQEEDVRPSASTNNQAALPMGRQTQPRAQAQARQNPPIRRGTQARGSTSRVSLLRNRFNRSITNGPRRR AHAPVTLFRDRNLQFPLDMDLDMRIDILEALEAAVEDSDFDTRHIMNLQRDFNENDYDMLLSLDENNGRQGASANQINCLPESVVQSDNFAENCAICLET PSIGETIRHLPCFHKFHKDHEGWTRHLAAGVTSLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	0	1
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	1.0	0.8643
AT5G51540			Zincin-like metalloproteases f...		Lus10031715 [exp]	2.2	0.8400
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	3.2	0.8253
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10036700 [exp]	3.5	0.8340
AT3G23900			RNA recognition motif (RRM)-co...		Lus10032590 [exp]	3.6	0.8171
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10027289 [exp]	4.0	0.8595
AT4G32910			unknown protein		Lus10011625 [exp]	4.2	0.8581
AT2G16950		ATTRN1	transportin 1 (.1.2)		Lus10025083 [exp]	4.5	0.8534
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	5.7	0.8138
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10021991 [exp]	6.7	0.8157

Compare expression of checked genes

Lus10011747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.