Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24220 621 / 0 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT1G78390 567 / 0 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 551 / 0 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 536 / 0 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT4G18350 523 / 0 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT3G63520 276 / 8e-86 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT4G19170 269 / 2e-82 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT4G32810 81 / 7e-16 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1) AT2G44990 59 / 5e-09 MAX3, CCD7, ATCCD7 carotenoid cleavage dioxygenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023673 [exp] 964 / 0 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 432 / 4e-146 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10035696 [exp] 293 / 3e-91 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10029513 [exp] 289 / 2e-88 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 279 / 1e-86 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10042482 [exp] 268 / 1e-84 AT1G78390 374 / 4e-125 nine-cis-epoxycarotenoid dioxygenase 9 (.1) Lus10016410 [exp] 283 / 2e-84 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 191 / 4e-55 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10042481 [exp] 130 / 5e-35 AT1G78390 271 / 2e-88 nine-cis-epoxycarotenoid dioxygenase 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176300 [exp] 690 / 0 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.011G112400 [exp] 563 / 0 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.001G393800 [exp] 557 / 0 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.011G084100 [exp] 544 / 0 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1) Potri.009G152200 [exp] 314 / 1e-99 AT4G19170 546 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G151900 [exp] 312 / 8e-99 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.009G152300 [exp] 305 / 1e-96 AT4G19170 539 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G265600 [exp] 289 / 1e-90 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265900 [exp] 284 / 8e-89 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265400 [exp] 284 / 1e-88 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [flax] [poplar] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Lus10011750 pacid=23165930 polypeptide=Lus10011750 locus=Lus10011750.g ID=Lus10011750.BGIv1.0 annot-version=v1.0 ATGATAGCCACCGCCTCTCTCGCCCTCTCTCCCAGCGGTGTATCTAATGTTGTTACTTATAACAACAACACTCCTACTCACTCCAAAATTTCAACTGTAT ATAACCACCTTTCCATAACAACACAACCTCCTCCTCCTCCTCGCTGGACGAAGAAAACAATTCCCCCGTCGGAGCTTCCTATCCATCATCTGAACGTTCT TCAGAGGCTGGCCGCATCAGCGTTGGATAAAGTGGAAGGCTTAATCATCGACCCATGGGAGAAATCCCACGTGCTGTCCAAGACCATTGATCCAGCGGTC CAAATCTCTGGTAACTTCGCCCCGGTCCATGAATGTCCGGTTCGGCACGGCCTGCAAGTTGTGGGCCACATCCCTCACTGCCTGCATGGTGTCTACCTCC GTAACGGCGCCAACCCTTTTCACGCGCCCACAGGTGGGCACCACTTGTTTGACGGGGACGGAATGGTCCACGCCCTCACATTAGGCCGCGGAGGATCCGC TAGCTACAGCTGTCGATACACTCGAACCAGCCGTTTCGTGCAGGAATCCGCTTGGGGGAAGCCCATGTTCCCAAAGCCCATCGGTGAGCTACACGGACAC GCCGGCTTGGCTCGGCTCGCTTTGTTCATGGCTAGGTCCGGAGCCGGGTTGTTAGACAGTACGCGTGGGGTTGGCGTGGCCAACGCTGGCCTCGTCTACT TCAACGGTAGGCTGCTCGCTATGTCCGAGGATGATCTGCCTTACCACGTTAGGATCAACGGTGATGGGGATCTCGAGACGATCGGACGGTTCGATTTCGA TCATCAGTTGGACTGCCCCATGATCGCTCACCCTAAGGTGGACCCTGTAACAGGAGAGCTGCACTCGTTGAGCTACAACGTGATGAAAAGGCCGTACTTG AAATATTTTAGTTTCGACGCGGACGGGAGGATAAAGCGACACGTGGACATACCCCTTGAGAAGCCGACCATGATTCACGATTTTGCCATGACACAGAATT TCATCCTCATCCCGGACCATCAGGTTGTGTTTAAGCTGTCCGAAATGGTTAGGGGTGGGTCCCCCGTTATCTACGATAGGAAGAAGAAGTCGAGGTTCGG GGTGCTGTCGAAAAACGACGACGAATCAGGAGGAGTTGAATTCATAGAGGTACCTGACTGCTTTTGCTTTCATCTTTACAATGCGTGGGAGGAAGGGGAG GAGATAGTGATACTAGGGTCATGCATGGACCCACCCGATTCGATATTTAACGAGTCAGAGGGTGATCATGTTGCTATGCGAACAGAGCTGTCAGAAATTC GGTTGAACCTAAGAACCAAGGGGTCGAGCAGAAAGGCGATAGTGTCCGGGATGAATTTGGAAGTGGGGCAAGTGGACCGTCGGTTAGTGGGGAGGAGGAA CCGGTTCGTGTACTTGGCGATAGCGGAACCGTGGCCGAAATGCAGCGGGATAGCGAAGGTTGATGTTGAGAGCAAGGAAGTAAGACGGTTCGATTACGGT AAAGGACGGTTTGGTGGAGAGCCGTTTTACGTGCCTAAGAATGCAATAAATAGTAATAGTGACGGGGATAGTGGTGATAGCGATGAGGGGTATTTGATGG GATTTGTGAGGGATGAAGAGGACCACACCACACCACACCACACCCTCCCCCATCCATTATTTATATATATACAGACACTAACCTCCCCTCCCCCTACCCT ATACTAG
AA sequence Show only first row Show all	>Lus10011750 pacid=23165930 polypeptide=Lus10011750 locus=Lus10011750.g ID=Lus10011750.BGIv1.0 annot-version=v1.0 MIATASLALSPSGVSNVVTYNNNTPTHSKISTVYNHLSITTQPPPPPRWTKKTIPPSELPIHHLNVLQRLAASALDKVEGLIIDPWEKSHVLSKTIDPAV QISGNFAPVHECPVRHGLQVVGHIPHCLHGVYLRNGANPFHAPTGGHHLFDGDGMVHALTLGRGGSASYSCRYTRTSRFVQESAWGKPMFPKPIGELHGH AGLARLALFMARSGAGLLDSTRGVGVANAGLVYFNGRLLAMSEDDLPYHVRINGDGDLETIGRFDFDHQLDCPMIAHPKVDPVTGELHSLSYNVMKRPYL KYFSFDADGRIKRHVDIPLEKPTMIHDFAMTQNFILIPDHQVVFKLSEMVRGGSPVIYDRKKKSRFGVLSKNDDESGGVEFIEVPDCFCFHLYNAWEEGE EIVILGSCMDPPDSIFNESEGDHVAMRTELSEIRLNLRTKGSSRKAIVSGMNLEVGQVDRRLVGRRNRFVYLAIAEPWPKCSGIAKVDVESKEVRRFDYG KGRFGGEPFYVPKNAINSNSDGDSGDSDEGYLMGFVRDEEDHTTPHHTLPHPLFIYIQTLTSPPPTLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10011750 [exp]	0	1
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10015988 [exp]	4.9	0.9027
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10002101 [exp]	6.9	0.8614
					Lus10000363 [exp]	7.1	0.8971
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	8.0	0.8042
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Lus10023673 [exp]	8.1	0.8929
					Lus10003285 [exp]	8.7	0.8971
					Lus10004996 [exp]	10.0	0.8971
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	11.2	0.8971
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	12.2	0.8971
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	13.2	0.8971

Compare expression of checked genes

Lus10011750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.