Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04690 619 / 0 KV-BETA1, KAB1 potassium channel beta subunit 1 (.1) AT1G60680 108 / 8e-27 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 107 / 2e-26 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 107 / 2e-26 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 106 / 9e-26 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 100 / 4e-24 NAD(P)-linked oxidoreductase superfamily protein (.1) AT4G33670 98 / 4e-23 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 98 / 5e-23 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT5G53580 94 / 2e-21 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 92 / 9e-21 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023674 [exp] 679 / 0 AT1G04690 619 / 0.0 potassium channel beta subunit 1 (.1) Lus10028045 [exp] 133 / 5e-36 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 128 / 4e-34 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 119 / 7e-31 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 112 / 4e-28 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10003751 [exp] 108 / 3e-27 AT1G04420 174 / 1e-51 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010340 [exp] 110 / 5e-27 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 107 / 3e-26 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 106 / 5e-26 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G052100 [exp] 643 / 0 AT1G04690 602 / 0.0 potassium channel beta subunit 1 (.1) Potri.008G167400 [exp] 127 / 2e-33 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G042100 [exp] 124 / 1e-32 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 120 / 2e-31 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 112 / 4e-28 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 111 / 6e-28 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 107 / 1e-26 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 101 / 3e-24 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 100 / 6e-24 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G052400 [exp] 99 / 1e-23 AT1G60680 395 / 1e-137 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10011751 pacid=23165916 polypeptide=Lus10011751 locus=Lus10011751.g ID=Lus10011751.BGIv1.0 annot-version=v1.0 ATGCAGTACAAAAATCTAGGACGATCGGGGCTCAAGGTCAGCCAGCTTTCCTACGGTGCTTGGGTCACTTTCGGCAATCAGATCGATGTGAAGGAGGCCA AGTCGCTTCTCCAGTGCTGCAGGGACAACGGCGTCAACTTCTTCGACAACGCTGAGGTCTATGCTAATGGCCGCGCTGAGGAGATTATGGGCCAGGCCAT CCGGGAGCTTGGTTGGAAGCGTTCTGATATCGTCGTCTCCACCAAGATCTTTTGGGGCGGTCAGGGTCCCAATGACAAGGGCCTTTCTAGAAAGCATATC GTTGAGGGCACAAAGGCTTCGCTCAAGAGGCTCGACATGGAATACGTTGATGTGATCTACTGTCACAGGCCAGACATATCAACACCGATTGAGGAAACAG TAAGGGCAATGAATCACGTCATCGATAAGGGTTGGGCGTTCTACTGGGGAACCAGTGAATGGTCAGCACAGCAGATCACTGAGGCATGGGGCGTTGCTGA GAGGCTAGATTTGGTTGGACCCATCGTGGAACAGCCAGAGTATAATATGCTATCTAGGCACAAGGTTGAGTCTGAGTACCTACCTCTGTACACCAACTAT GGTCTGGGTCTTACCACTTGGAGTCCACTGGCTTCCGGAGTACTTACTGGAAAATACAACAAAGGAAATATACCTCCAGACAGTCGTTTTGCATTGGAAA ATTACAAAAACCTTGCCAGCCGATCTCTGGTTGATGATGTGCTGAAGAAGGTTAACGGGCTTAAGCCAATAGCTGATGAACTAGGCGTGCCGATGGCTCA ACTTGCAATTGCGTGGTGTGCTAACAATCCAAATGTCTCATCGGTTATTACTGGTGCTACAAAGGAGTCTCAGATTCAAGAGAATATGAAGGCTGTAGAT GTCATTCCTCTACTGACACCAGCTGTGATGGAGAAGATTGAAGCCATACTTCAAACCAAGCCAAAACGTCAGGATTCGTACCGGTAA
AA sequence Show only first row Show all	>Lus10011751 pacid=23165916 polypeptide=Lus10011751 locus=Lus10011751.g ID=Lus10011751.BGIv1.0 annot-version=v1.0 MQYKNLGRSGLKVSQLSYGAWVTFGNQIDVKEAKSLLQCCRDNGVNFFDNAEVYANGRAEEIMGQAIRELGWKRSDIVVSTKIFWGGQGPNDKGLSRKHI VEGTKASLKRLDMEYVDVIYCHRPDISTPIEETVRAMNHVIDKGWAFYWGTSEWSAQQITEAWGVAERLDLVGPIVEQPEYNMLSRHKVESEYLPLYTNY GLGLTTWSPLASGVLTGKYNKGNIPPDSRFALENYKNLASRSLVDDVLKKVNGLKPIADELGVPMAQLAIAWCANNPNVSSVITGATKESQIQENMKAVD VIPLLTPAVMEKIEAILQTKPKRQDSYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10011751 [exp]	0	1
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	1.0	0.9076
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Lus10021913 [exp]	2.8	0.8108
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10008341 [exp]	3.2	0.8198
AT5G60160			Zn-dependent exopeptidases sup...		Lus10022460 [exp]	5.9	0.7887
AT1G45000			AAA-type ATPase family protein...		Lus10017972 [exp]	6.0	0.7689
AT5G14360			Ubiquitin-like superfamily pro...		Lus10022315 [exp]	6.0	0.8022
AT3G59920		ATGDI2	RAB GDP dissociation inhibitor...		Lus10027094 [exp]	8.3	0.8127
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10029922 [exp]	10.2	0.8052
AT4G22320			unknown protein		Lus10021308 [exp]	10.4	0.7790
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	11.4	0.7710

Compare expression of checked genes

Lus10011751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.