Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16970 89 / 2e-22 Plant self-incompatibility protein S1 family (.1) AT3G17080 89 / 2e-22 Plant self-incompatibility protein S1 family (.1) AT5G12070 87 / 1e-21 Plant self-incompatibility protein S1 family (.1) AT4G13700 91 / 3e-21 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT4G24975 84 / 1e-20 Plant self-incompatibility protein S1 family (.1) AT5G12060 82 / 2e-19 Plant self-incompatibility protein S1 family (.1) AT1G04645 81 / 2e-19 Plant self-incompatibility protein S1 family (.1) AT4G24974 81 / 4e-19 Plant self-incompatibility protein S1 family (.1) AT4G24973 78 / 4e-18 Plant self-incompatibility protein S1 family (.1) AT4G16195 77 / 1e-17 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028533 [exp] 131 / 4e-35 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10030565 [exp] 89 / 3e-22 AT3G16970 91 / 7e-24 Plant self-incompatibility protein S1 family (.1) Lus10030964 [exp] 86 / 4e-21 AT5G12060 102 / 2e-28 Plant self-incompatibility protein S1 family (.1) Lus10009113 [exp] 84 / 9e-20 AT4G13700 259 / 3e-85 purple acid phosphatase 23 (.1) Lus10016667 [exp] 82 / 6e-18 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10007119 [exp] 81 / 7e-18 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10008107 [exp] 78 / 7e-18 AT4G16195 98 / 1e-26 Plant self-incompatibility protein S1 family (.1) Lus10016665 [exp] 82 / 1e-17 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10007117 [exp] 80 / 1e-17 AT3G07130 221 / 2e-27 purple acid phosphatase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176000 [exp] 102 / 6e-25 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.017G144361 [exp] 91 / 1e-22 AT4G24975 110 / 1e-31 Plant self-incompatibility protein S1 family (.1) Potri.018G148700 [exp] 76 / 4e-17 AT1G04645 88 / 5e-23 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 71 / 1e-15 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.018G148630 [exp] 72 / 2e-15 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.017G055900 [exp] 73 / 8e-15 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 69 / 3e-13 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 68 / 4e-13 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.010G008300 [exp] 59 / 6e-11 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 56 / 8e-10 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10011753 pacid=23165909 polypeptide=Lus10011753 locus=Lus10011753.g ID=Lus10011753.BGIv1.0 annot-version=v1.0 ATGGCGACATCATCGTGTATGGTGGAGGCGAGATCCAACCCGTTCGACCCAAGGAAACCGAAAGTGACGGTAGTAATAGTGAATGACGTGGGGAAAGGCA GGGAACTGAAAATTCATTGTAAGTCAGGAGACAACGATCTAGGGATACACGTTTTGAAACCACAAAATAGTTTCAAGTTTAAATTCAGGCCGAGCATGAT TGGAACTACAAGATTTTATTGCCCGTTTAGTTGGGAGAAAGGATCAGATGCCAAATGGTTTGACGTCTACTATCAGTCGAGGGATTCTCCTGGGAACACT TATTTGGAATGGTCCATTAGGCCCAGTGGCCCTTGCAGGCCCGACAAAGGTGGTGAAGCCAAGATGGGTAGAAATGTGATTCCTGTGGGTAGTGAGGTTT GGTACGGGAAAGAGAGCCAGTGGGAAGTATATACTGATAAAGTAGAGAGGAAACTCCACCGTCTTTACATAACAGCTATGAGCGACGAGATAGTCTTTGA AACCATGTCATTGCCTGGTCCAGATTCATACGCTGCTCGACTAGCAATGGTCGGAGAACTTGGTCTCACAAGAAAGTCCTCGTCGACTATGGATCATTTG ACGATGAATGAATCATCTCTAATTTCATGTGCGTTCCCCGATTCGCCTATTAGAGAGACGTATCAACCTCGTTGGGGAAGGTATCTTTAG
AA sequence Show only first row Show all	>Lus10011753 pacid=23165909 polypeptide=Lus10011753 locus=Lus10011753.g ID=Lus10011753.BGIv1.0 annot-version=v1.0 MATSSCMVEARSNPFDPRKPKVTVVIVNDVGKGRELKIHCKSGDNDLGIHVLKPQNSFKFKFRPSMIGTTRFYCPFSWEKGSDAKWFDVYYQSRDSPGNT YLEWSIRPSGPCRPDKGGEAKMGRNVIPVGSEVWYGKESQWEVYTDKVERKLHRLYITAMSDEIVFETMSLPGPDSYAARLAMVGELGLTRKSSSTMDHL TMNESSLISCAFPDSPIRETYQPRWGRYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	2.0	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	2.8	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	3.5	1.0000
					Lus10011636 [exp]	4.0	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	5.0	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	5.5	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	5.9	1.0000
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	6.3	1.0000
AT2G02340		ATPP2-B8	phloem protein 2-B8 (.1)		Lus10025662 [exp]	6.7	1.0000
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013368 [exp]	7.1	1.0000

Compare expression of checked genes

Lus10011753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.