Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04650 727 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023676 [exp] 1816 / 0 AT1G04650 816 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175300 [exp] 1080 / 0 AT1G04650 900 / 0.0 unknown protein Potri.001G053000 [exp] 1065 / 0 AT1G04650 861 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011755 pacid=23165924 polypeptide=Lus10011755 locus=Lus10011755.g ID=Lus10011755.BGIv1.0 annot-version=v1.0 ATGGAGAGGAGGAGCGCGGGCGGTGGCGACTTGCAGATCCTAATAGAAGCCATTAAATCCTCCGATGTCGTGGAGAAGAGGATTCAACTGCTTGCTCAGC TCGAAGACTTGGAATTACGTGGGAAAGCCGAGTTGGCTTCTCTGGTTGAATGCCTATCTACATTTTGGGAGGACTACACTTGCTTGGATGCGTCGCAGTG TGTTTTGAATAAAACTATTGTGCATGTAGCCACCAAATTCGTAGGTTCAGATTCATCTGAATGTATGCCAGAGTTTCTTGCTCTTGCTACCAAGGCCAGC TCATGGCGTGGAAAGCATTTGAAGATGACTATCATGTCTACTGACGAGTCTCAAGAGGAAGAACACTGCCACCTCTTTTTCCAGCTTCTTTTGGAGTTCC TGGGACTGGCTACTGCTAACATAATATGTCTAACAAGAAATCCCCTCCTGAGCAACAAGGAATCAGTAGTTATTGTTGAGAACTTCATCCGAGAAGTACT AAATCTGATAAAGGATGTTATACCAGAGATTAAGAGAATGAATTCCTTGGGTCCAGAATTGCTAAAGGTTGCTCAAACAGCGGTGGATGCTTTGATGAAT TTTTGCAAGGAGTATTTCCAAATTATGAATGAGAATCTCTGTGATGGAAGGCTTACAGATGCTAGTGCCATAGCATCAGAAGGGGTCACCGTTAAGAATC ATGTTGCAAATATAACAAAATTTATGGTTGAAGGACTGTGTGAGCTGGGGAGTCTAGCTGCAAGTGATGGTGAAAGTCTGGTCACCATTCTCAATATGTC ATGGAAAGGTGTCGTTACTCTGCTTCAGCTGGGCAAGGAAGTAATATTGCATAAAGTAAGTGTGCAAGATATTATTAGAACGTTAAGATCATTGGCAAGC GAGCATCTTAAATCTGCATCTCAGGCCTGGTCTTCCACCAAAGAAACCGTTTCTGTTGCTGAATCCAGAAGGACTTTTATTCCAGTGAAGTTTTACCTTA TCAATGCAGTTAAGATATCATTACTGTACCCATGCCAAGCATGTTTTGTATACAGAGAGTTAATGATCTGCATCCTAATTATCTCAACTTTTAGGATTTC ACTAAGCTACCAGGAAAATTTGAAAAATGCTAGTCAAGTCTGCTCAGAACTATTGGATAAGACATCCATGGATCTTCTGACTTCTATATTGTGTTCAGCT GAAGTGAACCAAGACCTCAAGGATGAAGTTTTGAACTGGCTTTTCGCTGATGAATGTGTCTCTGTTTCACTGCAAATGGATTCAAGTACTTGTTACAACA TATGTTCAATGATTGAAATCTTTTCTGTCAGTTGTGAAGATGTTCCTGGGTCAGTATTGTTGTTACTTGGTCGCGTTGCATTATTCCAAGCAGTGCTTAG CTATTCTGCTGGATATGAAGAAGACGTGAAGATGAAACTTACTAGAAAACTTGGATGGGTCTTAGATGTTATGGTCAACGTGGACATATATTCTTATGTT CTTGCTTTGCAAATTCCAGTACTACATGATTCTGGGCAAAAGCTGGAAATTGCTTGGCAGCCCATGTTTTCAGCTCTGGTGAATTCTCTTAAGGCTTTTA TGATCGTTTTGCCATCAAGTATTGCTTGGGAGGAATTTCAGGATTTCTTGCTTGAGAATATTTTTCATCCTCATTTTCTTTGCTGGGAAATCATAATGGA AATGTTATGCTTTTTAGTTCGTTATGCTGAAGCAGAATTCGGAAAGGCTCTTACTTATAAACTCTGTGTCACAATGAAGCTGACAGCTGATCCTGCATTG ATTATCTTTCCTACTTCTCCGCTGAGAAAGATGGCAAAGGCAATCTGTTTGGTTCTTACAAATGGTAAAGCTTCTACTGTAGACCACATTTACAGGTTTA TTGTTGACAGTGATGAATCACAATCATCGATGATAATATATTCAGCACTGCTCTTGGAAGAGAAATTTGATGAAAGACAGCTGCAAGTTAGCCAGTCCAA TGCATTTGGATCTCCAGTTTTTGCTATATGTGCTTCCATGCAGTCGCACCAGGTCAGCATATCTGACGTTGACCTGAAGACCCTGAAGTTTCTAACTAAA ATTATCCAGAACTTAAAGAATCCCAAAGAGAAGTCAACGAAGGAACAATGCTTTAAGCTCTTGAGGGTAGCATTGGAAATCGTGGCAGAGATGAAACACC TATATCAATCTGACGAGATGGAGAAAGTCGTCATGGAACTTCACAGCCTATTTATCTCTGTGGAGGCAGCCTCAGATTTTCAGTTGCACCAGTGCAAACC ACATTTGGCACTCTTCATGGAAGGACTTGGAGAGATGCAGCTGTCAGAAGATGATGATTACGCAAAGAGCAATGCAGTGTGGGAGTTATACAAAATGTTG CTGAGGGAACGGAATTGGGCAGTTGCTCACCTTGCAATTGCATCATTTGGACACTTTGCCGGTCGTACGTCTTGCACTGAGCTCTGGAGATTTGTTCCAC CAGATGCAGCCCTTTCATATGATGTTATGTCAGCAAGTGAAGCATCCGAGGATAGGTTTATGTCTGCAATGAAGGCAGTCCTGGACAAGGAAGACGCACT ATTATTGATTGCAGTCAGCTCCCATCAGCATGAGTTGCTTGTGAAGGAAGGAACCATTCTGAGAGAAATAGTTGCGAGAATGCGTGAGATGCACATAGAA GAGGCTGCAGAATCTGAAGCCTTGGGGATCGACGTAGAAGGTCAATTCAGGAAGAGAAGAAAGCTCCCCGATGGCATTAGCAGAGGAGTAGAGTTGCTGC AGGATGGTCTAAAGGTTATCGGTGCCGGTCTTTCTCAGTGGCATGAGAATCTTGTTGATTCCACTGAACTTCAACAGAAGATTCTAACTCACTATTCTCG TCTTGAAGATGTGATCTCAAATCTATCAGGCTTGGGTGACAGTAGTTGA
AA sequence Show only first row Show all	>Lus10011755 pacid=23165924 polypeptide=Lus10011755 locus=Lus10011755.g ID=Lus10011755.BGIv1.0 annot-version=v1.0 MERRSAGGGDLQILIEAIKSSDVVEKRIQLLAQLEDLELRGKAELASLVECLSTFWEDYTCLDASQCVLNKTIVHVATKFVGSDSSECMPEFLALATKAS SWRGKHLKMTIMSTDESQEEEHCHLFFQLLLEFLGLATANIICLTRNPLLSNKESVVIVENFIREVLNLIKDVIPEIKRMNSLGPELLKVAQTAVDALMN FCKEYFQIMNENLCDGRLTDASAIASEGVTVKNHVANITKFMVEGLCELGSLAASDGESLVTILNMSWKGVVTLLQLGKEVILHKVSVQDIIRTLRSLAS EHLKSASQAWSSTKETVSVAESRRTFIPVKFYLINAVKISLLYPCQACFVYRELMICILIISTFRISLSYQENLKNASQVCSELLDKTSMDLLTSILCSA EVNQDLKDEVLNWLFADECVSVSLQMDSSTCYNICSMIEIFSVSCEDVPGSVLLLLGRVALFQAVLSYSAGYEEDVKMKLTRKLGWVLDVMVNVDIYSYV LALQIPVLHDSGQKLEIAWQPMFSALVNSLKAFMIVLPSSIAWEEFQDFLLENIFHPHFLCWEIIMEMLCFLVRYAEAEFGKALTYKLCVTMKLTADPAL IIFPTSPLRKMAKAICLVLTNGKASTVDHIYRFIVDSDESQSSMIIYSALLLEEKFDERQLQVSQSNAFGSPVFAICASMQSHQVSISDVDLKTLKFLTK IIQNLKNPKEKSTKEQCFKLLRVALEIVAEMKHLYQSDEMEKVVMELHSLFISVEAASDFQLHQCKPHLALFMEGLGEMQLSEDDDYAKSNAVWELYKML LRERNWAVAHLAIASFGHFAGRTSCTELWRFVPPDAALSYDVMSASEASEDRFMSAMKAVLDKEDALLLIAVSSHQHELLVKEGTILREIVARMREMHIE EAAESEALGIDVEGQFRKRRKLPDGISRGVELLQDGLKVIGAGLSQWHENLVDSTELQQKILTHYSRLEDVISNLSGLGDSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04650			unknown protein		Lus10011755 [exp]	0	1
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	1.7	0.9569
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	2.4	0.9586
AT3G57060			binding (.1.2)		Lus10039013 [exp]	2.4	0.9616
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	4.9	0.9382
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10033736 [exp]	6.3	0.9459
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	8.1	0.9218
AT1G67040			unknown protein		Lus10033565 [exp]	9.7	0.9390
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	11.4	0.9252
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	12.4	0.9277
AT2G31050			Cupredoxin superfamily protein...		Lus10039842 [exp]	12.5	0.8912

Compare expression of checked genes

Lus10011755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.