Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24240 1367 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 1254 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G56040 899 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 853 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G34110 788 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 629 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 620 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 615 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G49670 578 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 577 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023677 [exp] 1802 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028612 [exp] 957 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 946 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10032954 [exp] 872 / 0 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10000509 [exp] 820 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 811 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027221 [exp] 568 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10019248 [exp] 566 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 565 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G052500 [exp] 1531 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 1523 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 982 / 0 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G070900 [exp] 936 / 0 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G467300 [exp] 905 / 0 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G164800 [exp] 902 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.015G080800 [exp] 875 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 873 / 0 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G063300 [exp] 815 / 0 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 811 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011756 pacid=23165911 polypeptide=Lus10011756 locus=Lus10011756.g ID=Lus10011756.BGIv1.0 annot-version=v1.0 ATGCTCAGCTCGAGGCACCACCATTACCATCACCATTTCTTCTTCCTCCTTACCTTCTTCTTCTTCACCGTTTCTTCTTCTTCCTCCTCACAACAACAAT TACAAAACCCAGAATCAGTCCTTCTCCTAGCATGGCTCCAATCCTTTCCATCCCCACCTCCCCCGTCTTTCTCAAACTGGAACAACTCCTTCTCCTCTCC TTGCAACTGGACATTCCTCTCCTGCAACAACAACAACGGCTTCCTCACCCAAATCAACATTAAGTCTGTCCCTCTTCAGGTTCCCCTGCATGCTCTCAAC CTCTCCTCTTTCCGCTCCCTCACCACCCTCATCATCTCCGATTCCAACATCACCGGCACAATCCCGCCTGACATCGGCAGTATTTCCTCTCTCAGGGTTC TCGATCTCAGCTCCAATAGTTTAACAGGCGACATTCCTCCCACTCTCGGCCGACTCACCAATCTCCAGCACTTGGTCCTCAACTCCAACCAGCTCACCGC AAACATCCCTCCACAGCTCTCCAACTGCATTTCCTTGAAAACCCTCGAGATTTTCGACAATCGTTTATCTGGGTTTATCCCTCCTCAGCTTGGCAAGCTC TCCAGCCTTGAAGTTCTCAGAGCTGGTGGCAACAGTGAACTCTCCGGCCCAATACCTGAAGAGCTTGGCGCTTGCATTAACCTAACCGTTTTGGGTCTGG CCGAAACCAGGATTTCCGGGTCGATTCCTGTTTCATTGGGTAGGCTCCAGAATCTTCAGACCCTTTCCATTTACACGACGATGCTCTTCGGCGAGATTCC TCCTGAGCTAGGTAACTGTACTGAGCTTGTCGACTTGTTTCTTTACGAGAATGGTCTTTCCGGTTCGATTCCTCCCGAGATTGGGAAGCTTGGGAAACTT GAGCAGTTGCTGCTGTGGCAGAATAACTTGGTTGGTGATATCCCTGAAGAGATTGGTAACTGTTCTGCTTTGAGAATGATTGATCTTTCATTGAACTCTC TCTCTGGAACTTTACCATCTTCCCTTGGACGGCTTTCTGAGCTGGTGGAGTTTATGATTAGTAACAACAATGTCTCTGGTTCAATACCTTCCACCCTTTC CAATGCCACAAACTTGTTGGAGTTGCAGCTTGATACTAATCAGATCTCTGGTTTAATTCCTCCGGAGCTCGGGATGTTATCTAAGCTCAACGTGTTGTTT GCATGGCAAAACCAGCTTGAAGGAAGCATTCCTTCCACTCTTGCTACTTGCACTGACCTCCAATCTGTGGACTTGTCTCACAATTCCCTCACGGGCACCA TTCCTCCTGGTCTGTTCCAGCTTCGAAACCTCACCAAACTTCTGCTGATTGCAAATGACATTTCTGGTTCCATCCCTCCTGAGGTTGGCAACTGTAGCTC TCTTGTGCGTTTGAGGCTGGCGGGTAACAGGCTTGCTGGTTCCATTCCTAAGGAGATTGGTGTTCTCCAGAGCTTGAACTTTCTTGACCTCTCCAGCAAC AGGTTATCCGGTTCGATCCCTAACGAGATTGGAAGCTGCTCAGAGCTGCAAATGATTGACCTCAGCAACAATGTCATACAAGGGTCCCTTCCCAACACCA TCTCATCATTGACTGGATTACAAGTCTTGGATGTCTCTGGTAATCAGTTGTCAAGTCAGATACCGGCAAGCTTGGGCCGGTTGTTGTCACTGAGCAAGCT AATACTGAGCAGGAATTCCTTGTCTGGGATGATACCTTCTTCACTTGGCTTGTGTTCCAGTCTGCAATTGCTTGACCTTGGTGGAAATCAGCTCAGTGGG AACTTCCCTGTGGAGCTATGTCAGATTGAAGCCCTTGAGATTGCTCTCAACCTCAGTAGCAATCAACTTAGAGGCCCTATCCCACCTCAGATGTCTGCAC TCACTAAGCTATCAATACTAGACCTTTCTCGTAACTTGTTCGAGGGTCAATTAGATCCACTTGCAGATCTTGAAAATCTGGTGTCCCTCAACATTTCTTA CAATAATTTCACTGGCTATCTTCCTGATAATAAGCTCTTCAGGCAGCTAGCTCCAGCAGATTTGACAGGGAACAGAGGACTCTGTTCCACAATCCACGAC TCTTGTTTCTTGAGTACTGGGGTTGGCAAGGCAGGACTTCCTGGTAACGAAGCTAGACGATCGCGGAGGCTTAAGATTGCAATAGGTTTGCTCATTGCCC TGACGGTGGCAATGGTGATTATGGGGACAATGGCAATAGTTCGTGCTCGTAGAGCCATACGAGACGGTGATGATGAATCTGAACTAGGGGATTCATGGCC TTGGCAGTTCACCCCATTCCAGAAGATGAACATCTCAGTTGATCAAGTCCTGCGGTGTCTCGTGGACACCAATGTGATTGGGAAAGGATGCTCCGGAATC GTGTACCGTGCTGACATGGACAACGGTGAAGTCATAGCTGTGAAGAAGCTGTGGCCAAACACAATGGCAGCAGCAGCGAATGGTGAGAAAGGAGGAGGTG GTGGTGTTCGTGATTCGTTTTCAACCGAGGTGAAAACACTCGGTTCTATCAGGCACAAGAACATCGTGAGGTTCTTGGGATGTTGTTGGAATCGCAGCAC AAGGCTTCTGATGTATGATTACATGCCAAATGGAAGCCTTGGGGCACTTCTCCATGAGAGGACAGGACATGCACTAGAATGGGACTTGAGGTATCAAATC CTGTTGGGAGCTGCACAAGGACTATCTTATTTGCACCATGATTGTATCCCCCCTATTTTCCACAGAGACATTAAGGCCAATAACATCCTCATTGGTCTCG AATTCGAGCCTTACATTGCTGATTTCGGCCTTGCCAAGCTGGTAGATGATGGCGATTTCGCCAGATCATCCAACACAATTGCTGGCTCATACGGTTACAT TGCTCCTGAATATGGACACATGCTGAAAATCACAGAGAAAAGTGATGTGTATAGCTATGGGGTGGTGGTGTTAGAAGTTTTAACTGGGAAGCAACCGATT GATCCAACAATTCCTGAAGGCCTCCATCTAGTTGACTGGGTTAGAGAAAGGAGAGGAGGAATGGAGGTACTGGACCAAAGCCTGTTATTAACCAGACCAA AACCAGAAGTTGAGGAAATGATGCAGGCATTGGGAGTGGCATTGTTGTGTGTAAATTCTACCCCTGATGAAAGACCAACAATGAAAGATGTCGCGGCGAT GTTGAAGGAGATCAGACACGAGAGAGAAGAGTACGCCAAGGTCGATGCTTTGCTGAAAGGAACTCCAGCAGCAGCACCAAGTACTACCGCCAGCAACAGC AATAAAGATCAAGGGAATAAAAATTCAGGTAATGGTGAGGCTGGAACAGCCTCAGCAGCAAGAAGTCTGTTTCCAAAGAGCAATAACTCAAGCTTCTCAG CTTCATCTCTGCTTTACTCATCGTCATGA
AA sequence Show only first row Show all	>Lus10011756 pacid=23165911 polypeptide=Lus10011756 locus=Lus10011756.g ID=Lus10011756.BGIv1.0 annot-version=v1.0 MLSSRHHHYHHHFFFLLTFFFFTVSSSSSSQQQLQNPESVLLLAWLQSFPSPPPPSFSNWNNSFSSPCNWTFLSCNNNNGFLTQINIKSVPLQVPLHALN LSSFRSLTTLIISDSNITGTIPPDIGSISSLRVLDLSSNSLTGDIPPTLGRLTNLQHLVLNSNQLTANIPPQLSNCISLKTLEIFDNRLSGFIPPQLGKL SSLEVLRAGGNSELSGPIPEELGACINLTVLGLAETRISGSIPVSLGRLQNLQTLSIYTTMLFGEIPPELGNCTELVDLFLYENGLSGSIPPEIGKLGKL EQLLLWQNNLVGDIPEEIGNCSALRMIDLSLNSLSGTLPSSLGRLSELVEFMISNNNVSGSIPSTLSNATNLLELQLDTNQISGLIPPELGMLSKLNVLF AWQNQLEGSIPSTLATCTDLQSVDLSHNSLTGTIPPGLFQLRNLTKLLLIANDISGSIPPEVGNCSSLVRLRLAGNRLAGSIPKEIGVLQSLNFLDLSSN RLSGSIPNEIGSCSELQMIDLSNNVIQGSLPNTISSLTGLQVLDVSGNQLSSQIPASLGRLLSLSKLILSRNSLSGMIPSSLGLCSSLQLLDLGGNQLSG NFPVELCQIEALEIALNLSSNQLRGPIPPQMSALTKLSILDLSRNLFEGQLDPLADLENLVSLNISYNNFTGYLPDNKLFRQLAPADLTGNRGLCSTIHD SCFLSTGVGKAGLPGNEARRSRRLKIAIGLLIALTVAMVIMGTMAIVRARRAIRDGDDESELGDSWPWQFTPFQKMNISVDQVLRCLVDTNVIGKGCSGI VYRADMDNGEVIAVKKLWPNTMAAAANGEKGGGGGVRDSFSTEVKTLGSIRHKNIVRFLGCCWNRSTRLLMYDYMPNGSLGALLHERTGHALEWDLRYQI LLGAAQGLSYLHHDCIPPIFHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFARSSNTIAGSYGYIAPEYGHMLKITEKSDVYSYGVVVLEVLTGKQPI DPTIPEGLHLVDWVRERRGGMEVLDQSLLLTRPKPEVEEMMQALGVALLCVNSTPDERPTMKDVAAMLKEIRHEREEYAKVDALLKGTPAAAPSTTASNS NKDQGNKNSGNGEAGTASAARSLFPKSNNSSFSASSLLYSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24240			Leucine-rich repeat receptor-l...		Lus10011756 [exp]	0	1
AT5G48940			Leucine-rich repeat transmembr...		Lus10023677 [exp]	5.4	0.9079
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10025270 [exp]	5.9	0.8636
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10015038 [exp]	8.1	0.8890
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Lus10006152 [exp]	9.5	0.8745
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	14.5	0.8433
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10041425 [exp]	16.1	0.8579
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	16.4	0.9043
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	16.6	0.8958
AT5G49880			mitotic checkpoint family prot...		Lus10024456 [exp]	17.1	0.8542
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10002930 [exp]	20.6	0.8426

Compare expression of checked genes

Lus10011756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.