Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13720 355 / 1e-125 Inosine triphosphate pyrophosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023678 [exp] 450 / 2e-162 AT4G13720 357 / 9e-127 Inosine triphosphate pyrophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G175800 [exp] 363 / 4e-129 AT4G13720 341 / 8e-121 Inosine triphosphate pyrophosphatase family protein (.1) Potri.001G052400 [exp] 357 / 1e-126 AT4G13720 348 / 8e-124 Inosine triphosphate pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0269 [flax] [poplar] Maf PF01725 [flax] [poplar] Ham1p_like Ham1 family
Representative CDS sequence Show only first row Show all	>Lus10011757 pacid=23165915 polypeptide=Lus10011757 locus=Lus10011757.g ID=Lus10011757.BGIv1.0 annot-version=v1.0 ATGGCAGCGCCAGCCAACTTAGCAGCATCGAAGGTTGTGGTGCCCCGACCGGTGACATTTGTGACCGGAAACGCCAAGAAGCTTGAGGAAGTTCGCGCCA TTCTCGGCCAGTCCATTCCATTTCTGTCCCTCAAGCTCGACCTTCCTGAGCTTCAAGGCGAACCCGAAGATATCTCCAAGGAGAAAGCTCGCCTGGCGGC TGTCCAAGTGAAAGGACCCGTCTTGGTAGAGGACACTTGTCTTTGCTTCCATGCTCTCAAGGGTCTTCCTGGCCCCTACATCAAGTGGTTTCTGCAGAAG ATCGGTCATGAAGGTCTGAACAACTTGTTGATGGCATACGAGGATAAGTCTGCTTATGCTTTATGTTCATTCTCATTTGCTCTCGGACCTGATGTGGAGC CTATAACCTTCATTGGGAAAACTCCGGGGAAAATAGTGGCTGCAAGGGGACCTACCGATTTTGGATGGGATCCGATATTTCAACCTGCTGGCTTTGAGCA AACTTATGCAGAGATGGCTAAGGAAGAGAAGAATAAGATATCCCACCGCTACAGAGCTCTTGCAATGGTGAAAGACCACTTTGCAGAAGCTGGTTATGTC TTCGATACTGATGCCTTGATGAAGAGTGAGCATAATCATGTCCCTCCTAGTCTCATTCTCTATTTGGAAGCTGATACATTTCATTATGACTCTCACTCAC TGGACTTGCTCCTTGTATCAGGGAAAAGGGAGGAGGATGGTGTAGAGTCGTAA
AA sequence Show only first row Show all	>Lus10011757 pacid=23165915 polypeptide=Lus10011757 locus=Lus10011757.g ID=Lus10011757.BGIv1.0 annot-version=v1.0 MAAPANLAASKVVVPRPVTFVTGNAKKLEEVRAILGQSIPFLSLKLDLPELQGEPEDISKEKARLAAVQVKGPVLVEDTCLCFHALKGLPGPYIKWFLQK IGHEGLNNLLMAYEDKSAYALCSFSFALGPDVEPITFIGKTPGKIVAARGPTDFGWDPIFQPAGFEQTYAEMAKEEKNKISHRYRALAMVKDHFAEAGYV FDTDALMKSEHNHVPPSLILYLEADTFHYDSHSLDLLLVSGKREEDGVES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	0	1
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10036655 [exp]	3.2	0.8825
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	5.3	0.8814
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	5.9	0.8798
AT5G08420			RNA-binding KH domain-containi...		Lus10026187 [exp]	7.0	0.8771
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10037603 [exp]	7.4	0.8839
AT5G48870		SAD1	SUPERSENSITIVE TO ABA AND DROU...		Lus10011877 [exp]	9.4	0.8738
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	10.7	0.8487
AT2G20450			Ribosomal protein L14 (.1)		Lus10008246 [exp]	11.1	0.8817
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10014632 [exp]	12.5	0.8483
AT5G64680			unknown protein		Lus10018951 [exp]	14.3	0.8659

Compare expression of checked genes

Lus10011757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.