Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13710 630 / 0 Pectin lyase-like superfamily protein (.1.2) AT1G04680 619 / 0 Pectin lyase-like superfamily protein (.1) AT3G07010 585 / 0 Pectin lyase-like superfamily protein (.1) AT3G24670 569 / 0 Pectin lyase-like superfamily protein (.1) AT5G48900 559 / 0 Pectin lyase-like superfamily protein (.1) AT3G24230 546 / 0 Pectate lyase family protein (.1) AT1G67750 543 / 0 Pectate lyase family protein (.1) AT4G13210 543 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G63180 536 / 0 Pectin lyase-like superfamily protein (.1) AT4G24780 535 / 0 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023679 [exp] 706 / 0 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10038157 [exp] 616 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 606 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 606 / 0 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 517 / 0 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10033037 [exp] 517 / 0 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011400 [exp] 516 / 0 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10006456 [exp] 516 / 0 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10014887 [exp] 486 / 2e-171 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G052300 [exp] 659 / 0 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 645 / 0 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 622 / 0 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 618 / 0 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 558 / 0 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 548 / 0 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 513 / 0 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.010G051800 [exp] 509 / 4e-180 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 505 / 4e-179 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.006G122000 [exp] 460 / 5e-160 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10011758 pacid=23165923 polypeptide=Lus10011758 locus=Lus10011758.g ID=Lus10011758.BGIv1.0 annot-version=v1.0 ATGGTGGAGCCTCTCAGACTGTTTGCTCTCTGCACACTGCTGCTCGTCGGAGTTACGGGGACTACTCAGGACGGCGGCGGGATTTCCGGTCTTACTCTTG CTCGGAATGTTGGAACAGAGCCGTTGCAGAGCTCGAGTAACTCTTCCATGGCGGCTAGGAGCATCCACAACAGTACTGAAAGGAGAAAACTAGGCTACTT CTCTTGCGGAACTGGCAATCCTATTGATGATTGCTGGCGCTGTGACCCACATTGGCAGAAAAACCGTAAGCGGCTTGCTGACTGTGGCATTGGGTTTGGG AGGAATGCCATTGGTGGCCGTGACGGCAGGTACTACGTTGTCACAGACCCTAGGGACGATGACCCTGTGAACCCAAGACCAGGGACCCTGCGCCACGCTG TGATCCAGGACAGACCATTGTGGATCGTGTTCAAGAGGGATATGGTAATTCAATTGAAGCAGGAACTGATCATGAACAGCTTCAAGACCATTGACGGTCG TGGGGCCAATGTCCACATAGCCAACGGAGGATGCATCACTATTCAGTTTGTTACCAACGTGATAATCCACGGACTCCACATCCACGACTGCAAGCCCACT GGTAATGCTATGGTTAGGAGCTCGCCGACACACTACGGATGGAGGACAATGGCTGACGGTGATGCCATCTCCATCTTTGGGTCGAGTCATATTTGGATTG ATCACAACTCACTCTCTCACTGTGCTGATGGCCTAGTAGATGCTGTGATGGGATCCACGGCCATCACCATCTCCAACAACCACATGACCCACCATAATGA GGTTATGCTGTTGGGCCACAGTGACTCTTACACAAGGGACAAACAAATGCAAGTGACCATCTCATACAACCATTTTGGAGAGGGACTGATCCAGAGAATG CCAAGATGTAGACACGGCTACTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCTAACCCAACAATTAACAGCC AGGGTAACAGATACAATGCCCCGGTGAACCGGTTTGCCAAGGAGGTAACAAAGAGGGTGGAGACAGCAGCAACTGCGTGGAAGAACTGGAACTGGAGGTC AGAAGGAGACTTGTTACTTAACGGTGCTTATTTCACACCGTCGGGAGCAGGGGCCTCAGCCAGCTACGCACGTGCTTCCAGCTTGGGTGCAAAATCATCT TCAATGGTAGGAACAATCACTTCTAATGCAGGTGCCCTTGGGTGTCGCCGTGGCCGCCAGTGCTAG
AA sequence Show only first row Show all	>Lus10011758 pacid=23165923 polypeptide=Lus10011758 locus=Lus10011758.g ID=Lus10011758.BGIv1.0 annot-version=v1.0 MVEPLRLFALCTLLLVGVTGTTQDGGGISGLTLARNVGTEPLQSSSNSSMAARSIHNSTERRKLGYFSCGTGNPIDDCWRCDPHWQKNRKRLADCGIGFG RNAIGGRDGRYYVVTDPRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHIHDCKPT GNAMVRSSPTHYGWRTMADGDAISIFGSSHIWIDHNSLSHCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKQMQVTISYNHFGEGLIQRM PRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPVNRFAKEVTKRVETAATAWKNWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSS SMVGTITSNAGALGCRRGRQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13710			Pectin lyase-like superfamily ...		Lus10011758 [exp]	0	1
AT4G13710			Pectin lyase-like superfamily ...		Lus10023679 [exp]	1.0	0.9479
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	4.0	0.8774
AT2G47500			P-loop nucleoside triphosphate...		Lus10010302 [exp]	6.0	0.8816
AT3G01780		TPLATE	ARM repeat superfamily protein...		Lus10014599 [exp]	7.5	0.8800
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	9.2	0.8499
AT5G16730			Plant protein of unknown funct...		Lus10009550 [exp]	11.4	0.8764
AT2G47500			P-loop nucleoside triphosphate...		Lus10010301 [exp]	11.7	0.8685
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10013342 [exp]	14.3	0.8761
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Lus10022601 [exp]	15.9	0.8426
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	18.3	0.8292

Compare expression of checked genes

Lus10011758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.