Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63930 827 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 816 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 724 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 520 / 6e-168 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 513 / 1e-166 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G34110 511 / 4e-165 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 495 / 1e-159 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 495 / 4e-157 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G20270 486 / 2e-156 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 484 / 2e-155 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023681 [exp] 746 / 0 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10017782 [exp] 511 / 6e-165 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 509 / 3e-164 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011576 [exp] 493 / 4e-160 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 496 / 5e-160 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 487 / 9e-157 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10017267 [exp] 482 / 7e-155 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10031689 [exp] 483 / 8e-155 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10036242 [exp] 478 / 5e-153 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053400 [exp] 931 / 0 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 914 / 0 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 869 / 0 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G051300 [exp] 838 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 716 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 519 / 5e-168 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 501 / 6e-162 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 506 / 8e-162 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 498 / 1e-160 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G063300 [exp] 499 / 2e-160 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10011761 pacid=23165928 polypeptide=Lus10011761 locus=Lus10011761.g ID=Lus10011761.BGIv1.0 annot-version=v1.0 ATGGCTCCATGTAATGAATCAAGGAGAGTTGTTGACTCATGGTTTACAGCAATTCTCCTTATTTTAGCACTGTTGGTTTTCCCTTCGGAAGGGTTGAATT CTGAAGGTCAATACCTGCTAAAGCTGAAGAATGGCCTATCTGATGAACTGAATTACTTGGAAGATTGGAATCCAGCTGACCAAACGCCCTGCTCGTGGAC GGGAGTCAACTGTACCTCTGACTATACGCCTGTGGTCTGGTCTCTTGATTTGAGTTCAATGCACCTCTCTGGAACTCTCAGCTCCAGTATTGGTGGTTTG ATCAACCTGAGTTATCTCAATATGTCTTTCAACAAGTTGACAGGAGATATACCAAAGGCGCTTGGAAATTGTACCAAGTTGCAGCAACTAGTTTTGAACA ATAATCAGTTCAGTGGTCAAATTCCTACTGAGATTGGCAACTTATCTCTTCTTCAACTTTTGAACATATGCAACAATAAGATTTCCGGATCGCTCCCTGA AGAGTTTGGGAAGTTGGCCTCATTGGTTGAGTTTGTTGCCTATACAAACAATATCACTGGTCCACTGCCTCAATCCATTGGAGACCTCAAGAGTTTGGAG ACATTTCGAGCAGGTCAGAACGGGATTTCTGGTAGCATTCCGCCAGAGATAGGTGGATGTCAGAGCTTGAAGCTGCTTGGTCTTGCCCAAAATGACATAG GAGGTGAACTGCCTAACGAAATTGGAATGCTTGGGAGCTTAACTGATTTGATACTGTGGGATAATCAACTGTCAGGTTTCATACCCAAGGAGCTTAGCAA CTGCACAAGTCTTGAGACACTTGCCTTGTATGCTAACACTCTTGTTGGTCCTATTCCTGTGGAGCTCACCAATTTGAAGAATCTGAACAAGCTGTATATC TACAGGAATCAGTTGAATGGAACTATTCCAAGACAAATTGGGAATCTGTCTACGGCAACAGAGATCGATTTCTCCGAAAACTATTTGACTGGCGAGATCC CGGTTGAGTTCAGTCAGATAAAGGATCTGACACTACTCTACCTTTTCCAGAACCAGCTCACTGGTATAATACCAAATGAGCTTAGTGGTTTGAGGAACTT GACAAAGCTCGATCTCTCGATTAATTACCTCACTGGACCTATCCCATACGGGTTCCATGGAAGGATACCGCCAGAGATGTTGAACTGCAAGATGCTTCAA AGACTTGATCTCAGCCACAACAGTTTTACAGATAATTTGCCTGATGAGCTTGGGACCCTTTTGCAGTTAGAGATTCTCAAAGTGTCAGACAACAAATTTT CAGGAAGTATTCCTTCAGCATTAGGACATCTCGCCCATTTGACTGAACTGCAGATGGGTGGCAACCTGTTCTCTGGCAATATCCCATCAGAGCTGGGCTC CTTGTCAAGCTTACAGATTGCAATGAATCTCAGTTACAATAGTCTGACTGGTGAAATACCTCCGGAGCTCGGTAATCTTATTCTACTTGAATTCCTTCTG CTCAATAATAATCGTTTGACTGGTGAGATTCCAAGAACACTTGAAAGTCTTTCAAGTTTGCTTGGCTGCAACTTCTCTTACAATAATCTCACTGGACCTG TACCTTCTGTGCCCATTTTTCAAAACATGGCTCTCAGTAGCTTCATCGGAAACAAAGGTCTTTGTGGTGAACCTCTTGGTTATTGCGGCGGGGATCCTTC TACTACTTCTGTGCCACCTTTGACGAATGTGGACAAAGTCAGGAGTAAAGTTATTACAATAGTTGCTGCTGTTGTTGGTGGAGTTTCTCTCATTCTTATT GTTATCATACTATATTTCATGAGGCGTCCTGTTGAGACAGTTCCTTCTTTACACGACGACGATGATGTTGTTTCGTCCTCAGAATCGGATATCTACTTCC GCCCCAAAGAGGGGTTTACCTTCCAAGATCTAGTCGAGGCCACACACAATTTCCATGACAGCTATGTCATTGGGAGGGGAGCTTGTGGAACTGTATATAA AGCAGTTATGCAATGTGGACAAGTCATTGCGGTGAAAAAACTGTCCTCGAATAGGGAAGGAAATAACATTGAGAACAGTTTCAGGGCTGAAATTCTGACT CTTGGGAAGATCAGACATAGGAACATTGTAAAGCTTTATGGGTTTTGCTACCATCAGGGTTCCAACCTGCTATTGTACGAGTATATGGCTAGAGGTAGTC TTGGAGAGTTGCTTCATGGACCCTCATGTAGATTGGATTGGCCGACACGCTTCACCGTTGCTCTTGGTGCTGCGGAAGGTCTTGCCTATTTACACCACGA TTGCAGACCAAGGATCGTCCACCGCGACATCAAGTCCAACAACATCCTACTTGACGAAAAGTTCGAAGCTCATGTTGGAGATTTTGGTTTGGCAAAAGTA ATCGATTTGCCTTATTCGAAATCAATGTCTGCAGTTGCTGGATCTTATGGATATATTGCACCTGAATATGCATACACGATGAAGGTGACAGAAAAATGCG ACACCTACAGCTATGGAGTTGTTCTGTTGGAGTTACTAACTGGAAGAACTCCTGTACAGCCGATAGAACAAGGAGGAGATCTCGTGACATGGGTGAAACA ATATATCCGCGAGCATTCACTATCCCCCGGAATACTTGATCATAGGTTAAAGCTTGAAGATCAAAGGATCATCGATCACATGATAACAGTGATGAAAATT GCTCTCGTGTGCGCAAGTATATCCCCATTTGACCGGCCATCGATGCGAGAAGTTGTACTAATGCTGAACGAGTCGAATGAGCAACAAGGGAACTTGATTG AGTTCCCAAATAATGATGTTCCTCCGAAAGAGGAGGAAGAGGGTGCTCCATAA
AA sequence Show only first row Show all	>Lus10011761 pacid=23165928 polypeptide=Lus10011761 locus=Lus10011761.g ID=Lus10011761.BGIv1.0 annot-version=v1.0 MAPCNESRRVVDSWFTAILLILALLVFPSEGLNSEGQYLLKLKNGLSDELNYLEDWNPADQTPCSWTGVNCTSDYTPVVWSLDLSSMHLSGTLSSSIGGL INLSYLNMSFNKLTGDIPKALGNCTKLQQLVLNNNQFSGQIPTEIGNLSLLQLLNICNNKISGSLPEEFGKLASLVEFVAYTNNITGPLPQSIGDLKSLE TFRAGQNGISGSIPPEIGGCQSLKLLGLAQNDIGGELPNEIGMLGSLTDLILWDNQLSGFIPKELSNCTSLETLALYANTLVGPIPVELTNLKNLNKLYI YRNQLNGTIPRQIGNLSTATEIDFSENYLTGEIPVEFSQIKDLTLLYLFQNQLTGIIPNELSGLRNLTKLDLSINYLTGPIPYGFHGRIPPEMLNCKMLQ RLDLSHNSFTDNLPDELGTLLQLEILKVSDNKFSGSIPSALGHLAHLTELQMGGNLFSGNIPSELGSLSSLQIAMNLSYNSLTGEIPPELGNLILLEFLL LNNNRLTGEIPRTLESLSSLLGCNFSYNNLTGPVPSVPIFQNMALSSFIGNKGLCGEPLGYCGGDPSTTSVPPLTNVDKVRSKVITIVAAVVGGVSLILI VIILYFMRRPVETVPSLHDDDDVVSSSESDIYFRPKEGFTFQDLVEATHNFHDSYVIGRGACGTVYKAVMQCGQVIAVKKLSSNREGNNIENSFRAEILT LGKIRHRNIVKLYGFCYHQGSNLLLYEYMARGSLGELLHGPSCRLDWPTRFTVALGAAEGLAYLHHDCRPRIVHRDIKSNNILLDEKFEAHVGDFGLAKV IDLPYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDTYSYGVVLLELLTGRTPVQPIEQGGDLVTWVKQYIREHSLSPGILDHRLKLEDQRIIDHMITVMKI ALVCASISPFDRPSMREVVLMLNESNEQQGNLIEFPNNDVPPKEEEEGAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	0	1
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	1.0	0.9549
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Lus10009213 [exp]	3.3	0.8443
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10028585 [exp]	4.0	0.8703
AT2G20010			Protein of unknown function (D...		Lus10012970 [exp]	6.9	0.8588
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10036225 [exp]	7.5	0.8412
AT5G59990			CCT motif family protein (.1.2...		Lus10042841 [exp]	13.1	0.8317
AT2G23340	AP2_ERF	DEAR3	DREB and EAR motif protein 3 (...		Lus10010043 [exp]	13.9	0.8220
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	14.1	0.8623
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10000249 [exp]	14.9	0.7768
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10027369 [exp]	17.9	0.8307

Compare expression of checked genes

Lus10011761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.