Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13590 387 / 2e-134 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G64150 139 / 6e-38 Uncharacterized protein family (UPF0016) (.1) AT5G36290 130 / 5e-35 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) AT1G25520 110 / 2e-28 Uncharacterized protein family (UPF0016) (.1) AT1G68650 108 / 2e-27 Uncharacterized protein family (UPF0016) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023685 [exp] 510 / 0 AT4G13590 443 / 1e-156 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10032330 [exp] 155 / 7e-44 AT1G64150 333 / 8e-113 Uncharacterized protein family (UPF0016) (.1) Lus10024713 [exp] 143 / 6e-39 AT1G64150 322 / 5e-108 Uncharacterized protein family (UPF0016) (.1) Lus10026995 [exp] 134 / 2e-36 AT5G36290 401 / 5e-142 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10035040 [exp] 119 / 5e-30 AT1G25520 339 / 4e-116 Uncharacterized protein family (UPF0016) (.1) Lus10034293 [exp] 112 / 8e-29 AT1G25520 349 / 2e-123 Uncharacterized protein family (UPF0016) (.1) Lus10041478 [exp] 108 / 1e-27 AT1G25520 327 / 1e-114 Uncharacterized protein family (UPF0016) (.1) Lus10020195 [exp] 103 / 2e-26 AT5G36290 321 / 5e-112 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Lus10025155 [exp] 65 / 1e-12 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053600 [exp] 429 / 8e-151 AT4G13590 417 / 5e-146 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G174600 [exp] 411 / 7e-144 AT4G13590 369 / 2e-127 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.003G134300 [exp] 151 / 4e-42 AT1G64150 344 / 6e-117 Uncharacterized protein family (UPF0016) (.1) Potri.019G053400 [exp] 127 / 3e-34 AT5G36290 328 / 4e-113 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.013G086700 [exp] 127 / 6e-34 AT5G36290 322 / 8e-111 Uncharacterized protein family (UPF0016) (.1), Uncharacterized protein family (UPF0016) (.2) Potri.019G116100 [exp] 110 / 2e-28 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.008G117900 [exp] 110 / 2e-28 AT1G25520 344 / 2e-121 Uncharacterized protein family (UPF0016) (.1) Potri.010G128400 [exp] 108 / 2e-27 AT1G25520 335 / 1e-117 Uncharacterized protein family (UPF0016) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [flax] [poplar] LysE PF01169 [flax] [poplar] UPF0016 Uncharacterized protein family UPF0016
Representative CDS sequence Show only first row Show all	>Lus10011763 pacid=23165908 polypeptide=Lus10011763 locus=Lus10011763.g ID=Lus10011763.BGIv1.0 annot-version=v1.0 ATGAGTTCAACATCGACGTTCGCCCGAGCAATTCTGATGTTTCTTTTAAAAAATAAAGATCCCAAGGATGCCATCCTCCAAAACGTATATTATCGTCATC CTCTAATGGCTGATAGTAGTATCGCCGGAGACGGTCTCCGACCATCGAGATTCAGAGATGTCACAAGGCTCAATGCTGCGAAACGCACAATTCGAGCTCA TGCGTCCAATATTAGTATTGGATCATCAGGGGGCTGTGAAGGTGGGGAGGAGGAGGGGAACAGTCAGAAAAGTTCCGTAAATGGACCGACAGATGAGTCA TCTAAGATCGCAAGGCCTCCAGGAAAATTCCCTTATCCGCTATCTATTGCTCTTGTGTTACTTGGTTGTGCCGTTGTATACTCCCTCATTGTCTTTGCGA AGGGTACACCTTCTATCTTGGCTGCAATCTCAAAATCGGGCCTTGCTGCTGCTTTCTCCTTGATATTCGTGTCTGAAATCGGGGACAAGACATTTTTTAT CGCGGCACTATTGGCTATGCAATATGAGAAAGGACTGGTTCTTTTGGGTTCAATGGGCGCCCTTTCACTCATGACAGTCCTTTCAGTTGTTATTGGACGC ATATTCCAGTCAGTGCCTGCTCAGTTCCAAACAACACTTCCAATTGGAGAATATGCAGCAATTGCACTTCTCTTGTTCTTTGGGCTAAAATCGATAAAAG ATGCATGGGATCTTCCATCAGCTGACACTACAAGTGGGGAGAAGAGCAGTCCTGAACTTGATGAATATGCTTCAGCAGAAGAGCTTGTGAAAGAAAAGTT ATCAAAGAGGCTCACAAATCCATTTGAGATTGTGTGGAAGTCGTTCAGCCTTGTATTCTTTGCTGAATGGGGAGATCGTTCAATGCTTGCCACAATTGCT CTCGGTGCTGCTCAGTCTCCATGGGGTGTAGCAACGGGAGCCATTGCTGGACATTTGGTTGCGACGTCCGTAGCAGTAGTTGGGGGAGCTTTTCTTGCCA ACTACATCTCAGAAAAGCTTGTTGGCTACGTTGGTGGAGTACTCTTTCTTGTTTTCGCTGTGGCTACATTTTTCGGAGTTTTCTAA
AA sequence Show only first row Show all	>Lus10011763 pacid=23165908 polypeptide=Lus10011763 locus=Lus10011763.g ID=Lus10011763.BGIv1.0 annot-version=v1.0 MSSTSTFARAILMFLLKNKDPKDAILQNVYYRHPLMADSSIAGDGLRPSRFRDVTRLNAAKRTIRAHASNISIGSSGGCEGGEEEGNSQKSSVNGPTDES SKIARPPGKFPYPLSIALVLLGCAVVYSLIVFAKGTPSILAAISKSGLAAAFSLIFVSEIGDKTFFIAALLAMQYEKGLVLLGSMGALSLMTVLSVVIGR IFQSVPAQFQTTLPIGEYAAIALLLFFGLKSIKDAWDLPSADTTSGEKSSPELDEYASAEELVKEKLSKRLTNPFEIVWKSFSLVFFAEWGDRSMLATIA LGAAQSPWGVATGAIAGHLVATSVAVVGGAFLANYISEKLVGYVGGVLFLVFAVATFFGVF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13590			Uncharacterized protein family...		Lus10011763 [exp]	0	1
AT5G25800			Polynucleotidyl transferase, r...		Lus10018935 [exp]	4.7	0.8382
AT3G09860			unknown protein		Lus10023014 [exp]	6.2	0.8672
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	7.9	0.8367
AT1G64355			unknown protein		Lus10023098 [exp]	8.1	0.8179
AT2G28230			TATA-binding related factor (T...		Lus10030830 [exp]	8.7	0.8355
AT5G60335			Thioesterase superfamily prote...		Lus10028483 [exp]	9.5	0.8326
AT4G13590			Uncharacterized protein family...		Lus10023685 [exp]	10.7	0.8347
AT5G21060			Glyceraldehyde-3-phosphate deh...		Lus10034077 [exp]	13.2	0.7699
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	15.5	0.8290
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	16.0	0.8312

Compare expression of checked genes

Lus10011763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.