Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33180 141 / 5e-43 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023686 [exp] 189 / 1e-61 AT2G33180 160 / 1e-50 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053700 [exp] 146 / 7e-45 AT2G33180 167 / 2e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011764 pacid=23165918 polypeptide=Lus10011764 locus=Lus10011764.g ID=Lus10011764.BGIv1.0 annot-version=v1.0 ATGTTAAGGGGGATAGCATTTTCCACCAGCAGCAGCAGTTTCATGAGATGCTGCAAGTCTTCTTCGACTCCCTTAAACTTAACCTCCTCCAAGTTACAGA AGGAAGCGTTCCTACAATGTGGAAACAGCACAAGGAGGAGCTCGTTGTCGTTCAGGCAGCAGAGAAGCTGCTTCGGCGCTAGGATAAAGCGGGCAGCAAC AGGAGCAGGAGGAGGAGGAGGAGTAGCTCATCCGCCGCTTGATTTGACAGAGGAGAACATCAGGCAAGTGTTGGCAGAAGCCAGACTCGAGGCAATTATG TTAAAAAAGGGACTGTTGCATGTTGTTGGTGTCCTGCAGCTTGGGCAGCTGTTCGATGGCTCAGTTGGGATAACAGGGGAAGTTGAACTAGCTGATCTGG ATGGGCCGTATGTGAAGATTAGTCTCAAAGGTCGCTTCTGGCACAAACGCTCCACTGTAGTTGCCAGGCTTGGGAACTATCTGCAGCAGAGGATTCCTGA AATATTAGAAGTGGAAATTGAGGATGAGAAGCAGTTGGACGACAGCCCTGCAAATTTCTAA
AA sequence Show only first row Show all	>Lus10011764 pacid=23165918 polypeptide=Lus10011764 locus=Lus10011764.g ID=Lus10011764.BGIv1.0 annot-version=v1.0 MLRGIAFSTSSSSFMRCCKSSSTPLNLTSSKLQKEAFLQCGNSTRRSSLSFRQQRSCFGARIKRAATGAGGGGGVAHPPLDLTEENIRQVLAEARLEAIM LKKGLLHVVGVLQLGQLFDGSVGITGEVELADLDGPYVKISLKGRFWHKRSTVVARLGNYLQQRIPEILEVEIEDEKQLDDSPANF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33180			unknown protein		Lus10011764 [exp]	0	1
AT1G67660			Restriction endonuclease, type...		Lus10011377 [exp]	13.0	0.8177
AT3G29185			Domain of unknown function (DU...		Lus10032999 [exp]	13.1	0.8494
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Lus10030990 [exp]	15.2	0.8670
AT3G10540			3-phosphoinositide-dependent p...		Lus10037921 [exp]	15.2	0.8442
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029404 [exp]	15.7	0.7734
AT2G17972			unknown protein		Lus10026591 [exp]	22.6	0.8190
					Lus10027663 [exp]	25.0	0.7988
AT1G16445			S-adenosyl-L-methionine-depend...		Lus10031174 [exp]	26.6	0.7988
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10006267 [exp]	27.7	0.8410
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10029372 [exp]	28.9	0.8015

Compare expression of checked genes

Lus10011764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.