Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24040 488 / 4e-172 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 380 / 6e-129 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 370 / 2e-125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 366 / 8e-125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 368 / 1e-124 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G71070 360 / 4e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 348 / 3e-117 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 344 / 6e-115 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 335 / 4e-112 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 314 / 4e-104 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023687 [exp] 741 / 0 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 382 / 4e-130 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 378 / 2e-128 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10010887 [exp] 369 / 5e-125 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10012710 [exp] 361 / 5e-122 AT1G71070 561 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 356 / 4e-120 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 356 / 5e-120 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 347 / 3e-116 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 346 / 1e-115 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G053800 [exp] 571 / 0 AT3G24040 505 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 377 / 1e-128 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 375 / 2e-127 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 368 / 9e-125 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G114800 [exp] 363 / 4e-123 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 361 / 1e-121 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 357 / 1e-120 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 357 / 2e-120 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 347 / 4e-116 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G263000 [exp] 344 / 6e-115 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10011765 pacid=23165921 polypeptide=Lus10011765 locus=Lus10011765.g ID=Lus10011765.BGIv1.0 annot-version=v1.0 ATGCCGCCGCCGTCGCCGCGCCCAACCACCCCAACCACCCCTGGCGGCAAGGACAACAGCACCCGAACCACCACCATCACCGTCATCCTCGCCACTTCTT TCTTCTCTCTCCTCTTCATCTTCTCTCTCTCATCTTCCTCCTCCTCCTCCGCTTCCTCCCAATCCTTCAGGATCCGACCCGACCCGCGTCTCTTCCCTAC CCGCCAACCCACCTTCTCCACATTCCCTTCCGATCCCGCCCCACCTTCCATCGCCTACCTCATATCAGGATCCAAGGGCGACTCCAATCGGATCCTCCGC CTCCTGTTCTCCATTTACCACCCCAAAAACCACTACTTGCTACATCTAGACCTATCTCCCCCTGTTTCCGAGCGGGACGCCCTTGCCCTCGCCGTCGATT CGTCCCCCGTTTTCCAAGCTGCCCAGAACGTTGATGTGATTGGGAAACCCGATTTCGCGTATCACAGAGGGTCGTCCCCAGTTTCGACCACTTTACACGG AGCTTCTCTGTTGCTTAAGCTCTCCAATAACTGGGATTGGTTTGTTAGCCTTGGAGCTGCTGACTACCCTCTTGTCACCCAAGACGATCTGCTACACATT TTCTCCTACTTGCCCAAGGATCTCAATTTCGTGAGTCACAGTAGTTACATTGGCTGGAAAGAGTCTAGAAGACTGAAGCCAATAATTGTTGATCCAGGGC TTTATCTGGCAGAGAAAAGTTACATGTTTCATGCCACCCAGAGGCGACCTTTGCCTACTTATTTCAGGCTATTTACAGGTTCTTCATTCTCAGTCCTTAG TCGTAACTTCATCGAGCACTGCATCGTGGGCACCGACAACCTCCCAAGAATATTATTAATGTACTTCTCAAACACAATGTCTTCCATAACCAGCTACTTT CATACAGTGCTTTGCAATTCCCCTCAGTTCAACAGAACAATCATAAACCAGGACTTGCAATACAAAGTCCTGGATCAGTCCTTTAGGCAGGAACCACGTC GTCTCAACTCCAGTGACTTCACAACCATGATCCGGAGTGGAGCTGCATTTGCCAGCCAGTTCGGTGCAAACGATCCAGTGCTAGGCCGGATCGACAGTGA CATCCTGAAAAGGAGTCCTGGTGAAATCTTGCCAGGTGGGTGGTGCTTGGGAGACCCTGCAAACACTACATGTTCAGTCTGGGGCGACGCTAATGTGCTA AGGCCGGGGAAAGGAGCAGCAAGACTTGAAAAACTTGTCGTTAAAATGCTGTCTAACGGAAAGTTCAGGTCCCAGCAGTGTATAGTTGAGTGA
AA sequence Show only first row Show all	>Lus10011765 pacid=23165921 polypeptide=Lus10011765 locus=Lus10011765.g ID=Lus10011765.BGIv1.0 annot-version=v1.0 MPPPSPRPTTPTTPGGKDNSTRTTTITVILATSFFSLLFIFSLSSSSSSSASSQSFRIRPDPRLFPTRQPTFSTFPSDPAPPSIAYLISGSKGDSNRILR LLFSIYHPKNHYLLHLDLSPPVSERDALALAVDSSPVFQAAQNVDVIGKPDFAYHRGSSPVSTTLHGASLLLKLSNNWDWFVSLGAADYPLVTQDDLLHI FSYLPKDLNFVSHSSYIGWKESRRLKPIIVDPGLYLAEKSYMFHATQRRPLPTYFRLFTGSSFSVLSRNFIEHCIVGTDNLPRILLMYFSNTMSSITSYF HTVLCNSPQFNRTIINQDLQYKVLDQSFRQEPRRLNSSDFTTMIRSGAAFASQFGANDPVLGRIDSDILKRSPGEILPGGWCLGDPANTTCSVWGDANVL RPGKGAARLEKLVVKMLSNGKFRSQQCIVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	0	1
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	1.7	0.8677
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	3.5	0.8128
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10023471 [exp]	5.0	0.8186
AT3G15810			Protein of unknown function (D...		Lus10007118 [exp]	6.0	0.7901
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	6.7	0.8229
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10023687 [exp]	7.7	0.8548
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	10.4	0.8187
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	10.8	0.7885
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	12.4	0.8005
AT3G59350			Protein kinase superfamily pro...		Lus10026708 [exp]	13.7	0.7932

Compare expression of checked genes

Lus10011765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.