Plant FIBer expression Database

Lus10011766 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24030 42 / 5e-05 hydroxyethylthiazole kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039429
[exp]
76 / 9e-17 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1)
Lus10003490
[exp]
55 / 5e-10 ND /
Lus10023688
[exp]
0 / 1 AT3G24030 390 / 3e-138 hydroxyethylthiazole kinase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G174400
[exp]
0 / 1 AT3G24030 391 / 2e-138 hydroxyethylthiazole kinase family protein (.1)
Potri.001G053900
[exp]
0 / 1 AT3G24030 161 / 1e-50 hydroxyethylthiazole kinase family protein (.1)
PFAM info
Representative CDS sequence
>Lus10011766 pacid=23165906 polypeptide=Lus10011766 locus=Lus10011766.g ID=Lus10011766.BGIv1.0 annot-version=v1.0
ATGCAAGGATCGATTAAGTGCATCCGCAATGAAGCTGGACCTTTAGCCAAGGCCAGTCCTAGCTCCCCAGCAATGCAGAATACAGATAGTCCTGAAGCTG
TTGCTTCTAAGGGATGTGTTGGGTCAACAGAAACAAAAGCGAATGCGTGCTGTCACTGCACACCCCGTTGCTGTTATCTTCTGCATCATGGCAACTCCGT
TATGCGCACCAACCACTCGATTGAGCCAACGACTTGGCTGCAACTATATACACCACATCCATGTGCCGTGAATGTTTCCGTCCGCGGCGTCGGTGGCTTG
GATTGTTTTGGAGTCGCCACCAATCGCTTGAAAGTGGATTGGACACTTGGAGTCTGGTTCAGATTTTGGAACCTAAACCAGGCATGGTCTGCGTTCAGAG
ATCTGGATAAGGGGGACGGTTACATGTGA
AA sequence
>Lus10011766 pacid=23165906 polypeptide=Lus10011766 locus=Lus10011766.g ID=Lus10011766.BGIv1.0 annot-version=v1.0
MQGSIKCIRNEAGPLAKASPSSPAMQNTDSPEAVASKGCVGSTETKANACCHCTPRCCYLLHHGNSVMRTNHSIEPTTWLQLYTPHPCAVNVSVRGVGGL
DCFGVATNRLKVDWTLGVWFRFWNLNQAWSAFRDLDKGDGYM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011766
[exp]
0 1
AT4G15530 PPDK pyruvate orthophosphate dikina... Lus10006147
[exp]
3.3 0.9468
AT1G21000 PLATZ transcription factor fam... Lus10005350
[exp]
5.1 0.9338
AT5G52605 Defensin-like (DEFL) family pr... Lus10031095
[exp]
6.2 0.9338
AT5G56670 Ribosomal protein S30 family p... Lus10019054
[exp]
7.2 0.9338
Lus10035508
[exp]
8.1 0.9338
AT3G18040 ATMPK9 MAP kinase 9 (.1.2) Lus10038956
[exp]
8.8 0.9338
AT1G43650 nodulin MtN21 /EamA-like trans... Lus10018890
[exp]
9.3 0.6537
Lus10012269
[exp]
9.5 0.9338
AT5G04347 Plant self-incompatibility pro... Lus10029375
[exp]
10.2 0.9338
AT5G48540 receptor-like protein kinase-r... Lus10030777
[exp]
10.8 0.9338

Lus10011766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.