Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G24460 320 / 5e-107 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 310 / 3e-103 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G06170 144 / 4e-39 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 122 / 5e-31 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023690 [exp] 638 / 0 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10017728 [exp] 274 / 2e-88 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10033091 [exp] 272 / 3e-88 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10034023 [exp] 146 / 7e-40 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 145 / 4e-39 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10008709 [exp] 116 / 7e-29 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10026111 [exp] 113 / 8e-28 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174200 [exp] 539 / 0 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.018G076000 [exp] 310 / 5e-103 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.008G201900 [exp] 141 / 6e-38 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.001G038100 [exp] 119 / 5e-30 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.003G186500 [exp] 117 / 2e-29 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [flax] [poplar] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Lus10011768 pacid=23165897 polypeptide=Lus10011768 locus=Lus10011768.g ID=Lus10011768.BGIv1.0 annot-version=v1.0 ATGGATCTGCAAGGAGATCCTGAATCGATTCAGGCTGGTTCTGTACACGTCAATCCCAGCACCATAGTTCCACTACAAGGTGTGGCTGATGATCAGTTAC AGCCAAAGAGGTTTGATTACTCAATGGCTAAGAGAAAATCACTGAGAGCTCGCTATGTATATTGCATCATTTTCTTGATAACAAATCTTAAAGCTTGGTT CTTTAGAGACTATGGCCAACAACTCCTTAGTCGGTTCAATTATATAAAAGCCTGTGGAGTAGATGGAGAGCACTGCTGTCAGACGTTGGGAGTTCTACGA GTTATCATTTTGATAGTGTCAATGGGAGCTCCTTTCTTCCTTCCTTCAAATCACATTCAACTCTATGGCGAACTTGCTCGTGTTGGTGCAGGGGTTTTTC TAGTTCTGCAACTTGTGAGTGTGATTGAGTTCATCAGCTGGTGGAACAACTACTGGATGCCTGATGAAGGCAACAACCAAAGTTGCTCCTTTGGACTATT GATGTCAACAGTATTTTACATAGCTTCATTCAGTGGGATTCTGGCAATGTACATATTGTATGGACGTAAAATAGAATGTGTTCTCAATATATTCTTCATC ACATGGACTGCAGTTTTGCTTATTGTAATGATGGCCATCTCATTGCATTCCAAGGTGAATAGAGGTCTTCTATCCTCTGCAATTATGGCTTCATATCTCA TCTTTCTTTGTTGGTGTGCTATAAGAAGTGAACCTGACAGTGACAAATGCAACAACCAAGCTCAAAATCATGGAAAAAGTGACTGGACCACCATAGTTAG CTTCCTGATAGCCATAGGTGCAATAGTCATGGCAACCTTCTCAACGGGAATGGATTCTAAATCATTCCAGTTCCGGAAGGAGAAGATGGAAGGGGAAGAT GATATAATTCCATATGACTATGGTTTCTTCCATCTGGCGTTTGCATTGGGAGCTATGTACTTCGCAATGCTCTTCATCAGTTGGAACCTCAAGAGCTCAG CTACCAAGTGGAGTATTGACGTAGGGTGGGCGAGTACGTGGGTGAAAGTCCTGAACGAGTGGTTTGCAGCCACTATATACATATGGAAGCTGATTTTCCC AGTTGTGAGGCAACCCACACTATCAAACTGTAATGTGCGCAACGTGTAG
AA sequence Show only first row Show all	>Lus10011768 pacid=23165897 polypeptide=Lus10011768 locus=Lus10011768.g ID=Lus10011768.BGIv1.0 annot-version=v1.0 MDLQGDPESIQAGSVHVNPSTIVPLQGVADDQLQPKRFDYSMAKRKSLRARYVYCIIFLITNLKAWFFRDYGQQLLSRFNYIKACGVDGEHCCQTLGVLR VIILIVSMGAPFFLPSNHIQLYGELARVGAGVFLVLQLVSVIEFISWWNNYWMPDEGNNQSCSFGLLMSTVFYIASFSGILAMYILYGRKIECVLNIFFI TWTAVLLIVMMAISLHSKVNRGLLSSAIMASYLIFLCWCAIRSEPDSDKCNNQAQNHGKSDWTTIVSFLIAIGAIVMATFSTGMDSKSFQFRKEKMEGED DIIPYDYGFFHLAFALGAMYFAMLFISWNLKSSATKWSIDVGWASTWVKVLNEWFAATIYIWKLIFPVVRQPTLSNCNVRNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33205			Serinc-domain containing serin...		Lus10011768 [exp]	0	1
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10027554 [exp]	9.5	0.7242
AT1G49740			PLC-like phosphodiesterases su...		Lus10019843 [exp]	10.4	0.6498
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10037473 [exp]	11.7	0.7389
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	28.8	0.6281
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10017615 [exp]	29.8	0.7118
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000404 [exp]	45.4	0.6845
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002777 [exp]	45.4	0.6885
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039313 [exp]	45.6	0.6507
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	55.7	0.6616
AT5G10530			Concanavalin A-like lectin pro...		Lus10020452 [exp]	56.5	0.6609

Compare expression of checked genes

Lus10011768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.