Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62370 506 / 0 heme binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023692 [exp] 704 / 0 AT3G62370 511 / 0.0 heme binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G118600 [exp] 544 / 0 AT3G62370 502 / 2e-179 heme binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09459 [flax] [poplar] EB_dh Ethylbenzene dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10011771 pacid=23165933 polypeptide=Lus10011771 locus=Lus10011771.g ID=Lus10011771.BGIv1.0 annot-version=v1.0 ATGGCGCATCCACCTCTCCCGATACTGCTGCTGTTGCTCACCACCTTCTCCCACCTTAACCGGTTAGCCAACTCGCACCAGGAGTCCGGAACCTGGACTT GCGACTCCGACTCCGACATCCGACTCCCAGCCGGATTCAACCCGGGACTCGTCACCGTCGATGGCCGCCCCGACGATTGGAAGGTTGTTGAGGGCTTCGA CTTCTCCCTCCGTCCTGCTCTTGACCCCGATGCCGATAAGGAGTATAAAGCTGGCAAAATGACTGTTAAGGCGTTGCACGATGGCAGTGACGTGTTCTTC TTTTTGGAAGTTGATGGGGATTATGCCTATTCTAATGGGGTCAACACCAAATGTCCTTCTGTTTCTCTCATGTTTCAGATTGGTGATGATGCCACCTATC ACAACATGGGCGGTTGTAAGGAGGGAAAAGGTACTTGTACCAATAAGACTTGCAAAGGCCATGAAGTTGACATCATGCACTTCTCACTTGGAAATGCTAT CCCGGGACGTCTCTATGGTGGAAATCCTATTGAGAATGCAAATGGGAATGGAGGTGACAGATTTGGCCATCTAGTTGATCTTTATGCCTGGAATCCGCAC TGTAGATTTCTCGACGGTATAGGTCCCTCAGGAAACGACTCCAGTGCACAGAATAACTGGAAAGGATCGTGGTGGCATAGTAGTTTAGATGTTCACTCTG GTTTCATCCAGGAAGACAGTCCGTATGGATCAGGTGGTCAAAAGGGCAAGTACTATTTCGAATTCTCTAGGCCTTTAAGAACCATGGACAGACTCCAACA GGATGCACAGTTCACGATCAGCGGATCAAGCAAGATGGGAGTTGCATTCTGGTATCCAGTAGACGGGAATCCATGGCACGGATCAGGACATTACTCCATC AACTGTGATTGGATCCCCTTGGACATCTTACCAGGCAGTTCTAAGCTAGCGATGTCGGCATCCAGAGGAGGAGGAGGAGGTGGTGGCTCAGGAGATGTGG CGAGTGCGTTTGCCCTTCTGTTTTCAGTAATCTCTATATGCCTCTCCGTTTTTGTGGCTTACAATGTTGCTAAACCCAGGAGGAGTAGCATTCCCTTCAC ACCCATGGAAAATCTGTAA
AA sequence Show only first row Show all	>Lus10011771 pacid=23165933 polypeptide=Lus10011771 locus=Lus10011771.g ID=Lus10011771.BGIv1.0 annot-version=v1.0 MAHPPLPILLLLLTTFSHLNRLANSHQESGTWTCDSDSDIRLPAGFNPGLVTVDGRPDDWKVVEGFDFSLRPALDPDADKEYKAGKMTVKALHDGSDVFF FLEVDGDYAYSNGVNTKCPSVSLMFQIGDDATYHNMGGCKEGKGTCTNKTCKGHEVDIMHFSLGNAIPGRLYGGNPIENANGNGGDRFGHLVDLYAWNPH CRFLDGIGPSGNDSSAQNNWKGSWWHSSLDVHSGFIQEDSPYGSGGQKGKYYFEFSRPLRTMDRLQQDAQFTISGSSKMGVAFWYPVDGNPWHGSGHYSI NCDWIPLDILPGSSKLAMSASRGGGGGGGSGDVASAFALLFSVISICLSVFVAYNVAKPRRSSIPFTPMENL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62370			heme binding (.1)		Lus10011771 [exp]	0	1
AT1G30130			unknown protein		Lus10028119 [exp]	8.5	0.6592
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10034925 [exp]	11.7	0.7037
AT5G18590			Galactose oxidase/kelch repeat...		Lus10043420 [exp]	15.0	0.6678
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	35.5	0.6161
AT1G72520		ATLOX4, LOX4	Arabidopsis thaliana lipoxygen...		Lus10027379 [exp]	51.2	0.5523
AT5G48470			unknown protein		Lus10038234 [exp]	53.7	0.6118
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10002958 [exp]	56.0	0.5215
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	59.9	0.5910
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10017433 [exp]	64.3	0.5926
AT1G67785			unknown protein		Lus10018082 [exp]	71.2	0.5610

Compare expression of checked genes

Lus10011771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.