Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 260 / 2e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 187 / 6e-59 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 184 / 7e-58 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 185 / 8e-58 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 183 / 4e-57 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 182 / 1e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24780 144 / 7e-42 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT5G24770 138 / 1e-39 ATVSP2, VSP2 vegetative storage protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023731 [exp] 531 / 0 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011140 [exp] 188 / 3e-59 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 184 / 1e-57 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 177 / 6e-55 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 177 / 1e-54 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 164 / 1e-49 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 127 / 2e-36 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 90 / 3e-22 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10028259 [exp] 86 / 2e-19 AT2G39920 194 / 2e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066500 [exp] 363 / 6e-128 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 310 / 3e-107 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 190 / 7e-60 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 185 / 1e-57 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 183 / 3e-57 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 168 / 2e-51 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 157 / 2e-47 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 87 / 7e-20 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10011774 pacid=23165515 polypeptide=Lus10011774 locus=Lus10011774.g ID=Lus10011774.BGIv1.0 annot-version=v1.0 ATGGCAGGCCTCACTACTCTGCTGCTATGTTTCTGTGGTGTGTTTGTCAGTGTTGCAGCGGTAGACTGGAACATTCTGCACCACAGGAAGCAATCATCCA GAAAGGAATTGGGCATCAGCTTGGACAACTACTGCGAGAGCTGGAGGATGAACGTTGAGCTTCACAACATCCGGGATTTCCAAGTTGTCCCCGAGGAGTG CATCTCCTACATTGGTAACTACGTTACGTCAACCCAGTACCAGATCGATATGCAGTTGACCATCGAGGAGTGTGTCGTCCACATCAGCACCAGCTGCAAC TTTTGGAAAAATGGCAAAGATGCGTGGCTGTTTGACATTGACGACACCCTCCTGTCCACCGTCCCCTACTTCAAGCAGCACCAATTCGGGGGAGAGATGT TCAACCTGACCGCATTCGAGGAATGGGCGGAGCAACGGAAGGCACCAGCAGTGGAACACACGATGAAGTTGTTCAAGGAGCTGAAATCATCGGGAGTACA TATCTTCTTGGTCTCCAGCAGGAGGGAGCACCTCAGATCAGCCACAACTGACAACCTTGTTAATGTTGGGTACCATGGTTGGAAAGGCCTCATACTAAGG GGAGCAGATGATGAAGAGATTGGAGTGGTAGATTACAAAGCTAAAGCGAGGCAGCAATTGATCAATGAAGGGTACAAGCTCTGGGGGATTGTTGCAGACC AATACAGCAGCTTTGCGGGATATCCACGTGCTGGACGGACATTCAAGCTTCCAAATCCTTTGTATTATGTTTCTTAA
AA sequence Show only first row Show all	>Lus10011774 pacid=23165515 polypeptide=Lus10011774 locus=Lus10011774.g ID=Lus10011774.BGIv1.0 annot-version=v1.0 MAGLTTLLLCFCGVFVSVAAVDWNILHHRKQSSRKELGISLDNYCESWRMNVELHNIRDFQVVPEECISYIGNYVTSTQYQIDMQLTIEECVVHISTSCN FWKNGKDAWLFDIDDTLLSTVPYFKQHQFGGEMFNLTAFEEWAEQRKAPAVEHTMKLFKELKSSGVHIFLVSSRREHLRSATTDNLVNVGYHGWKGLILR GADDEEIGVVDYKAKARQQLINEGYKLWGIVADQYSSFAGYPRAGRTFKLPNPLYYVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04040			HAD superfamily, subfamily III...		Lus10011774 [exp]	0	1
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	1.7	0.9394
AT2G03350			Protein of unknown function, D...		Lus10037126 [exp]	2.4	0.9515
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10030383 [exp]	3.5	0.9343
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	3.6	0.9303
AT4G32000			Protein kinase superfamily pro...		Lus10041026 [exp]	6.0	0.8931
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10008611 [exp]	6.3	0.9318
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10024854 [exp]	6.9	0.9407
AT5G42320			Zn-dependent exopeptidases sup...		Lus10012267 [exp]	9.0	0.9009
AT4G29140		ADS1	ACTIVATED DISEASE SUSCEPTIBILI...		Lus10012944 [exp]	10.1	0.9156
					Lus10017937 [exp]	10.2	0.8936

Compare expression of checked genes

Lus10011774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.