Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26740 361 / 9e-128 CLO1, ATPXG1, ATS1 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) AT5G55240 350 / 3e-123 ATPXG2 ARABIDOPSIS THALIANA PEROXYGENASE 2 (.1) AT2G33380 332 / 2e-116 AtCLO3, CLO-3, RD20 RESPONSIVE TO DESSICATION 20, Arabidopsis thaliana caleosin 3, Caleosin-related family protein (.1.2) AT5G29560 285 / 8e-98 caleosin-related family protein (.1) AT1G23240 159 / 2e-48 Caleosin-related family protein (.1.2.3) AT1G70670 152 / 3e-46 AtCLO4 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) AT1G70680 144 / 4e-43 Caleosin-related family protein (.1) AT1G23250 95 / 1e-23 Caleosin-related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023732 [exp] 494 / 2e-180 AT4G26740 360 / 3e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Lus10034325 [exp] 150 / 4e-45 AT1G70670 197 / 3e-64 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10041446 [exp] 137 / 9e-41 AT1G70670 203 / 2e-67 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Lus10014588 [exp] 129 / 3e-37 AT1G70670 197 / 6e-65 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G066600 [exp] 375 / 4e-133 AT4G26740 377 / 5e-134 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1) Potri.008G133800 [exp] 193 / 4e-62 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1) Potri.010G107900 [exp] 188 / 5e-60 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF05042 [flax] [poplar] Caleosin Caleosin related protein
Representative CDS sequence Show only first row Show all	>Lus10011775 pacid=23165540 polypeptide=Lus10011775 locus=Lus10011775.g ID=Lus10011775.BGIv1.0 annot-version=v1.0 ATGGCTCGGGAGTTGGAGAGGAGGGACGGAATGTCTACAGAGGCGCCGCTTGCTCCCGTTACCTTCGACCGCCACGTCCGCGATGACCTCGAAGATCGCT TGCCCAAGCCCTATATGGCGAGAGCATTGGAAGCACCAGATGCAGAGCATCCATATGGGACACCAGCACGCAGGCACAATGGGTTGAGTGTCCTTCAGCA GCATGTCGCCTTCTTTGATCAAGATGACAACGGCATCGTCTACCCTTGGGAAACTTACTCCGGATGCCGCCAGATCGGTTTCAACCCTATTTTCTCACTC TTTCTGGCTGTCGTCATCAATGCTGTCATGAGCTATCCCACTCTCCCTTCATGGCTTCCTTCTCCATTGTTCCCAATCTACATTTACAACATTCACAAGG CCAAACATGGTAGCGACTCCGGCACCTACGACACTGAAGGAAGGTACCTGCCAGTGCACTTCGAGAATATCTTCAGCAAGTACGCCAGGACACAGCCTGA CAGGCTTTCCTTTGGGGAGCTTTGGGACATGACTGAAGGCAACAGAGTTACCCTTGACTTCTTTGGATGGATTGCAAGTAAAGTGGAGTGGGGGATTCTG TACATCCTTGCAAGGGATGAAGAAGGGTACCTGTCTAAAGAAGCTATAAGGCGCTGCTTTGATGGTAGCTTGTTCGAGTATTGTGCTAAGATGAACATGG GTGCCGACTTAAAGATGAGCTGA
AA sequence Show only first row Show all	>Lus10011775 pacid=23165540 polypeptide=Lus10011775 locus=Lus10011775.g ID=Lus10011775.BGIv1.0 annot-version=v1.0 MARELERRDGMSTEAPLAPVTFDRHVRDDLEDRLPKPYMARALEAPDAEHPYGTPARRHNGLSVLQQHVAFFDQDDNGIVYPWETYSGCRQIGFNPIFSL FLAVVINAVMSYPTLPSWLPSPLFPIYIYNIHKAKHGSDSGTYDTEGRYLPVHFENIFSKYARTQPDRLSFGELWDMTEGNRVTLDFFGWIASKVEWGIL YILARDEEGYLSKEAIRRCFDGSLFEYCAKMNMGADLKMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10011775 [exp]	0	1
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10003838 [exp]	1.4	0.8665
AT1G53120			RNA-binding S4 domain-containi...		Lus10041931 [exp]	1.7	0.8577
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	5.1	0.8704
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10010732 [exp]	8.5	0.8194
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10011003 [exp]	9.2	0.8523
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	9.8	0.8471
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10025010 [exp]	12.2	0.7828
AT5G18750			DNAJ heat shock N-terminal dom...		Lus10032539 [exp]	13.2	0.8464
					Lus10033439 [exp]	22.4	0.8075
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10009220 [exp]	23.2	0.8290

Compare expression of checked genes

Lus10011775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.