Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50310 92 / 3e-22 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 91 / 1e-21 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT4G36950 89 / 4e-21 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT5G27510 85 / 1e-19 Protein kinase superfamily protein (.1) AT3G06030 85 / 3e-19 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G05100 82 / 1e-18 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT2G42550 82 / 1e-18 Protein kinase superfamily protein (.1) AT1G53570 81 / 1e-17 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 79 / 4e-17 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT2G32510 77 / 8e-17 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031963 [exp] 142 / 1e-43 AT3G06030 87 / 1e-21 NPK1-related protein kinase 3 (.1) Lus10026894 [exp] 146 / 2e-43 AT3G50310 187 / 1e-57 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034242 [exp] 144 / 2e-42 AT3G50310 190 / 2e-58 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029023 [exp] 142 / 2e-42 AT3G50310 147 / 8e-43 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10039141 [exp] 137 / 9e-40 AT3G46140 168 / 1e-49 Protein kinase superfamily protein (.1) Lus10034285 [exp] 134 / 1e-38 AT5G27510 183 / 6e-56 Protein kinase superfamily protein (.1) Lus10029047 [exp] 127 / 2e-37 AT3G50310 93 / 5e-23 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10029019 [exp] 125 / 6e-37 AT3G50310 96 / 3e-24 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10034288 [exp] 127 / 9e-36 AT3G50310 181 / 5e-55 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139300 [exp] 98 / 2e-24 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.007G044800 [exp] 93 / 2e-22 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139200 [exp] 92 / 5e-22 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.009G131100 [exp] 87 / 1e-20 AT3G50310 200 / 4e-62 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Potri.014G155000 [exp] 87 / 2e-20 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.015G146700 [exp] 84 / 1e-18 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 84 / 1e-18 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 83 / 1e-18 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.002G228200 [exp] 82 / 2e-18 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.005G033400 [exp] 82 / 3e-18 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011778 pacid=23165529 polypeptide=Lus10011778 locus=Lus10011778.g ID=Lus10011778.BGIv1.0 annot-version=v1.0 ATGGATGCTATCGGAGAATGCCCACGGTTATTTGCTTCAAGTGCTGAAGATGGCGAGATTTCAAACCGATGTCGCGACGACGACCTTCTACTCACGCTGC TAGACCCATTGCGACGTCAAGCCGGACAACATCCTTACGTTCCTGTCGGATCCGGGCGGTGCCGATTCAAGCTTGCCGATTTCGGGCTGGCAGTGAAGAC TCCGGAGGCAGGCAGTACGAGGAAGACTTTCAGAGGGACGCTGGTGTACATGCCGCCTGAGGCGCTTCTCTCCGGTAATGTTTCGCCGGCGATGGACATA TGGAGTTTGGGATGCACGGTGGTTGAAATGCTGTCGGTAGCGCGACCGTGGAGTAGATGCAAGGATGACGACGAAGTGACTGTAGAGATTCGGAAAGGGT GCCAGCCTGAGATTCCAAAGTTGTTGTATCAACAAGGGAAGGATTTCCTCAACAAGAACTTCATTAGGGATTCAAAGCACCGCCTCCCTGCAAAATTGCT TCTCCAGCATCCCTTTCTAATCGGTGCCGGCTGGAAATTGGTTGGAGTAGGCGGAGGAACGAGCAATCAGGATGCGACAGCTGATTGA
AA sequence Show only first row Show all	>Lus10011778 pacid=23165529 polypeptide=Lus10011778 locus=Lus10011778.g ID=Lus10011778.BGIv1.0 annot-version=v1.0 MDAIGECPRLFASSAEDGEISNRCRDDDLLLTLLDPLRRQAGQHPYVPVGSGRCRFKLADFGLAVKTPEAGSTRKTFRGTLVYMPPEALLSGNVSPAMDI WSLGCTVVEMLSVARPWSRCKDDDEVTVEIRKGCQPEIPKLLYQQGKDFLNKNFIRDSKHRLPAKLLLQHPFLIGAGWKLVGVGGGTSNQDATAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50310		MKKK20, MAPKKK2...	MAPKK kinase 20, mitogen-activ...		Lus10011778 [exp]	0	1
					Lus10007677 [exp]	4.2	0.7862
					Lus10031895 [exp]	17.3	0.6643
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	18.7	0.6845
AT4G24380			unknown protein		Lus10008722 [exp]	23.3	0.6930
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	29.2	0.6602
AT4G20040			Pectin lyase-like superfamily ...		Lus10008272 [exp]	29.7	0.6344
					Lus10026928 [exp]	31.2	0.6602
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	33.1	0.6602
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	34.9	0.6602
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	36.6	0.6602

Compare expression of checked genes

Lus10011778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.