Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01360 43 / 0.0001 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) AT1G55230 42 / 0.0002 Family of unknown function (DUF716) (.1) AT5G13890 42 / 0.0003 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023735 [exp] 198 / 2e-63 AT1G32120 51 / 1e-07 unknown protein Lus10023736 [exp] 129 / 5e-38 ND / Lus10012588 [exp] 62 / 5e-11 AT5G13890 341 / 9e-118 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10041505 [exp] 62 / 7e-11 AT5G13890 335 / 2e-115 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Lus10039191 [exp] 46 / 2e-05 AT1G55230 391 / 1e-137 Family of unknown function (DUF716) (.1) Lus10013749 [exp] 45 / 3e-05 AT1G55230 386 / 1e-135 Family of unknown function (DUF716) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067000 [exp] 260 / 2e-86 AT5G13890 50 / 9e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.008G170900 [exp] 247 / 2e-81 AT5G13890 50 / 7e-07 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.002G237200 [exp] 49 / 2e-06 AT5G13890 220 / 3e-70 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2), Family of unknown function (DUF716) (.3) Potri.005G122800 [exp] 46 / 1e-05 AT3G01360 240 / 1e-77 Family of unknown function (DUF716) (.1), Family of unknown function (DUF716) (.2) Potri.001G008900 [exp] 42 / 0.0002 AT1G55230 345 / 3e-119 Family of unknown function (DUF716) (.1) Potri.003G216600 [exp] 42 / 0.0004 AT1G55230 419 / 9e-149 Family of unknown function (DUF716) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04819 [flax] [poplar] DUF716 Family of unknown function (DUF716)
Representative CDS sequence Show only first row Show all	>Lus10011779 pacid=23165526 polypeptide=Lus10011779 locus=Lus10011779.g ID=Lus10011779.BGIv1.0 annot-version=v1.0 ATGGCGTCACTGGCAACACATTTCTCCGCCGGGCTGCTCCTTCTCCCGGTGGGTCTCCGCCGTCTCTTCACTTCGTCTTCCCTCTACCTCAACAACCCAT CTCAGTTCCGATCCAAGGTTTGGTATTTCTCTGATCCCAAGTGGAAGAATCTCGATTTCTTCATCCTAACCGTCGCTCTCCCCATCGCTTCCTTTTCTCA ACTCTTCCTCTTCTTGTCCTTCCCTGCCCACCCAACTTACCGCTTCTCATTCCTTCATCAATCCCTACTCCTCTTCCTCTTCTGGGCATTGACCCTTCTG TTTCTTCTGCGTGATTGCGTTTCCCCAATGTTTATCAACGAGAGCATTTTGTTTGCCATATCTGGGGTTGTGTTCCTGCTGGAGTCTTCTATAATTGGGA GAGGGGTTTCTGGTGTAGTTAGTTCGGTTATTTACGGCTGGAGTGCTGATCTGACCATTGTTTGTGGGCTCTGTTGCTTGTATTTGGCAGTTTGGCCAAG TGCATTCTTTGCCGAGTTTTGTCTGTCTTGTGGACTGATCTTTAAAGGGACTTGGCTTCTGCAAACTGGGTTAAGTATGTACACGGATTTCTTTGCTTTT AAAGGTTGCCTAAAGATTGTGCTTTCTCCAAGAGATGGGAATGCTGAGCTCAAGTGTGATCTTGACCAGGATGCCTTCAGGGGTGAGGCATTGGCGAGTT TGTTGTTTGCTGTCCATTCCATTTTGGTCTTGCTTCTGAGTTTTGGGGTTTTCGGGTTATTGTCAAGTAATAAGAAGTTCAGGCATGGTGAAACTAGTGG GCCATTGCTAGCGGGTCTAGATTCAGAGAATCGTTTGGTGCGGACGATTGCAGAAAGTGAGTTTGAATGA
AA sequence Show only first row Show all	>Lus10011779 pacid=23165526 polypeptide=Lus10011779 locus=Lus10011779.g ID=Lus10011779.BGIv1.0 annot-version=v1.0 MASLATHFSAGLLLLPVGLRRLFTSSSLYLNNPSQFRSKVWYFSDPKWKNLDFFILTVALPIASFSQLFLFLSFPAHPTYRFSFLHQSLLLFLFWALTLL FLLRDCVSPMFINESILFAISGVVFLLESSIIGRGVSGVVSSVIYGWSADLTIVCGLCCLYLAVWPSAFFAEFCLSCGLIFKGTWLLQTGLSMYTDFFAF KGCLKIVLSPRDGNAELKCDLDQDAFRGEALASLLFAVHSILVLLLSFGVFGLLSSNKKFRHGETSGPLLAGLDSENRLVRTIAESEFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32120			unknown protein		Lus10011779 [exp]	0	1
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10029494 [exp]	5.3	0.8081
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10022211 [exp]	6.5	0.7668
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	7.3	0.7787
AT1G26300			BSD domain-containing protein ...		Lus10036831 [exp]	11.7	0.7826
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10036221 [exp]	45.7	0.6994
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	52.7	0.7218
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	81.8	0.7418
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10020997 [exp]	109.3	0.7265
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	131.0	0.7007
AT5G22400			Rho GTPase activating protein ...		Lus10020625 [exp]	135.8	0.6942

Compare expression of checked genes

Lus10011779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.