Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33385 219 / 1e-67 ARPC2B actin-related protein C2B (.1.2) AT1G30825 127 / 3e-33 DIS2, ARPC2, ARPC2A DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) AT3G06980 130 / 2e-32 DEA(D/H)-box RNA helicase family protein (.1) AT4G09730 75 / 3e-14 RH39 RH39 (.1) AT1G12770 64 / 8e-11 ISE1, EMB1586 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G34910 63 / 2e-10 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 58 / 7e-09 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 57 / 8e-09 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G31970 57 / 1e-08 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G22310 57 / 1e-08 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023737 [exp] 345 / 2e-116 AT2G33385 397 / 1e-137 actin-related protein C2B (.1.2) Lus10038771 [exp] 233 / 5e-69 AT3G06980 645 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10039091 [exp] 229 / 4e-68 AT3G06980 654 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10008071 [exp] 134 / 1e-35 AT1G30825 456 / 6e-163 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Lus10002867 [exp] 133 / 2e-35 AT1G30825 223 / 1e-71 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Lus10017781 [exp] 70 / 1e-12 AT4G09730 732 / 0.0 RH39 (.1) Lus10029196 [exp] 60 / 2e-09 AT1G59990 671 / 0.0 RNA helicase 22, EMBRYO DEFECTIVE 3108, DEA(D/H)-box RNA helicase family protein (.1) Lus10038140 [exp] 59 / 3e-09 AT1G12770 390 / 2e-132 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 59 / 5e-09 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067100 [exp] 291 / 1e-95 AT2G33385 410 / 5e-143 actin-related protein C2B (.1.2) Potri.008G170800 [exp] 282 / 3e-91 AT2G33385 410 / 2e-142 actin-related protein C2B (.1.2) Potri.001G073300 [exp] 139 / 2e-37 AT1G30825 449 / 1e-159 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.003G157700 [exp] 139 / 2e-37 AT1G30825 429 / 5e-152 DISTORTED TRICHOMES 2, ACTIN-RELATED PROTEIN C2A, Arp2/3 complex, 34 kD subunit p34-Arc (.1) Potri.010G004700 [exp] 143 / 3e-37 AT3G06980 635 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G198300 [exp] 67 / 1e-11 AT4G09730 743 / 0.0 RH39 (.1) Potri.005G257400 [exp] 58 / 1e-08 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G003600 [exp] 57 / 1e-08 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G250700 [exp] 56 / 4e-08 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 55 / 5e-08 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04045 [flax] [poplar] P34-Arc Arp2/3 complex, 34 kD subunit p34-Arc CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10011780 pacid=23165532 polypeptide=Lus10011780 locus=Lus10011780.g ID=Lus10011780.BGIv1.0 annot-version=v1.0 ATGTTAGTCGGAGAAGTGAAGAAGGAAGTGAAGAAGTTGACTGTGAAGGAGAAAGAGGAGTTGTTGTTCATGACCTTATGCTGCTTCATTCTATCCTCAA ACCCATCAACCTTCATACTTGCACCCTCCTGCTTTATTCACTTCCCCATCGCATTTCCCTCCTCAACCAGGTCACATTTCCCTCCTCAAAGTGAAAGGCA ATATAAACCTTCTCCGGGGGATGATTTCTTCAGTAGGAAATCCTTCAAAGACGTGGGATGCAAAGAAGATATTGTTGATGCTTTGAAAGCACAGCTTTTT CAGCGTCCTTCCCAGATTCAGGCCATGGCATTTGCTCCTGTGATGGAAGGGAAGACCTGTGTCATAGCCGATCAAAGTGGATCAGGGAAAACCCTGGCAT ATCTTATCCCTATTCAGCGTATTAAGGAGGAGGAAGCACAAACAGTTGGTGGATCTGCAGCTCGAAAAAGTCCTCAAGTATTCATAATGGTGCCAACCGC TGAGTTGGCTTCTCAGGTTAGTTTCATCAAGGCCCAACTGAGTTGGAGTTATGAAGAAGAGAAAGAGCACTACTGCAACATGGCTTGCTTTGAGAGGGAG TCGCCAGCACTGAAGGAACTCCTCCTCAAGTTATACCACACTGAAAAGCCAGTGGAGATTGATCATCACCTATATGAATTTGGGTTAGTGGAATACCATG TTCAGCCACAAAAAATTACCGCAGTATTCCCGATGCATTTTAAAGAACATTCAGATGTCATTATTGCAACAGCATTCTTTCAGGAACTTATGGACGTGGG TAGTTCAAAGAGATGGGCCAAAGCGCCACCCTGTACCTGGTCACCTATACCACCACCGGAATTGAGGGGAGAGTCTATACAAGATTTGAGCACAAATGGC GGGTTCGTCAGTTTTGATATTTCCTCACGTCATGTTGAAGGTAAAAAGCTAGAGAAGACAGTATGGAGCTTATTGAACTTCTCTGCCTATGTTAAAAACC ACATTAAGTGCACCAGAGGTTTCATACAGAGAAAGATGCAAACGCGTCTGGAAAGTCTGGTTGAGGTCCTGCACAAAGGGACCACGGACACTGATGACAA AATTAAAAAGAGAAAAGGACGTCGTCACATCAGGAAACTGGTCAGCTTATCGAAGTTTAAAACACAAAAAAGAAGATTCAGTAACATAGTCAGCAAGATC AAGCATATTGGCTACAGAATCAAAATCCATGGTTTCAGTCGATTCTGCAGACTATGGCTATCACTCCCAAAATTCTCTTCTTCTAAGGGATACGCCAGAC TGGAGTAG
AA sequence Show only first row Show all	>Lus10011780 pacid=23165532 polypeptide=Lus10011780 locus=Lus10011780.g ID=Lus10011780.BGIv1.0 annot-version=v1.0 MLVGEVKKEVKKLTVKEKEELLFMTLCCFILSSNPSTFILAPSCFIHFPIAFPSSTRSHFPPQSERQYKPSPGDDFFSRKSFKDVGCKEDIVDALKAQLF QRPSQIQAMAFAPVMEGKTCVIADQSGSGKTLAYLIPIQRIKEEEAQTVGGSAARKSPQVFIMVPTAELASQVSFIKAQLSWSYEEEKEHYCNMACFERE SPALKELLLKLYHTEKPVEIDHHLYEFGLVEYHVQPQKITAVFPMHFKEHSDVIIATAFFQELMDVGSSKRWAKAPPCTWSPIPPPELRGESIQDLSTNG GFVSFDISSRHVEGKKLEKTVWSLLNFSAYVKNHIKCTRGFIQRKMQTRLESLVEVLHKGTTDTDDKIKKRKGRRHIRKLVSLSKFKTQKRRFSNIVSKI KHIGYRIKIHGFSRFCRLWLSLPKFSSSKGYARLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10011780 [exp]	0	1
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	1.0	0.9604
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	2.4	0.9538
AT1G53165		ATMAP4KALPHA1 ,...	Protein kinase superfamily pro...		Lus10028163 [exp]	3.7	0.9287
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	7.2	0.9381
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	7.4	0.9331
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	8.1	0.9311
AT3G15220			Protein kinase superfamily pro...		Lus10042862 [exp]	8.8	0.9020
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031319 [exp]	9.2	0.8978
AT3G14170			Plant protein of unknown funct...		Lus10008138 [exp]	9.8	0.9087
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	11.2	0.9436

Compare expression of checked genes

Lus10011780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.