Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33390 57 / 8e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023738 [exp] 112 / 5e-34 AT2G33390 73 / 2e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G067200 [exp] 70 / 6e-17 AT2G33390 76 / 3e-19 unknown protein Potri.008G170700 [exp] 67 / 1e-15 AT2G33390 77 / 8e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011781 pacid=23165541 polypeptide=Lus10011781 locus=Lus10011781.g ID=Lus10011781.BGIv1.0 annot-version=v1.0 ATGGGTGAAGATGATAAGGAGGCTAATGGATGCAATACCAAGCCTTTGATATGCAAAGATAGTGAGGAAATGGAGAATCAAGTGGATGATTGTGAGGAGG AGGAGGAAGAGAGCGAGTCTAAGTCCTTGTTGGCTCCGGGGAAAGGTGGGATGTCTAGAAAGTCGCCCAAAGCTGGGAGGAAAGTTCAGTGGAATGACAA CAATGGGCATAAGCTTGTCGAGATTCTGGAGTTTGAACCCAGGGCGGTAGCTGGTGTATACATCTGTTTATTGGTTCCTGCGGATATGTGA
AA sequence Show only first row Show all	>Lus10011781 pacid=23165541 polypeptide=Lus10011781 locus=Lus10011781.g ID=Lus10011781.BGIv1.0 annot-version=v1.0 MGEDDKEANGCNTKPLICKDSEEMENQVDDCEEEEEESESKSLLAPGKGGMSRKSPKAGRKVQWNDNNGHKLVEILEFEPRAVAGVYICLLVPADM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33390			unknown protein		Lus10011781 [exp]	0	1
AT2G33390			unknown protein		Lus10023738 [exp]	2.4	0.8362
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10007254 [exp]	6.0	0.7950
AT2G41290		SSL2	strictosidine synthase-like 2 ...		Lus10012095 [exp]	7.1	0.8532
AT3G25530		GR1, GLYR1, GHB...	glyoxylate reductase 1 (.1.2)		Lus10012301 [exp]	12.2	0.7768
AT1G75860			unknown protein		Lus10033130 [exp]	14.6	0.8047
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	15.7	0.7848
AT5G28910			unknown protein		Lus10027959 [exp]	15.7	0.7381
AT4G28290			unknown protein		Lus10031644 [exp]	22.5	0.7973
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	26.7	0.7819
AT1G17930			Aminotransferase-like, plant m...		Lus10000686 [exp]	27.9	0.8006

Compare expression of checked genes

Lus10011781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.