Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14300 243 / 4e-76 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 214 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55550 186 / 5e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 185 / 2e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G07810 181 / 1e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 166 / 9e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 142 / 3e-38 XF41, ATRBP1 RNA-binding protein 1 (.1) AT1G17640 127 / 7e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 109 / 4e-26 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 107 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023740 [exp] 347 / 3e-117 AT4G14300 276 / 6e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043124 [exp] 283 / 2e-91 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032624 [exp] 264 / 4e-84 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10022889 [exp] 236 / 9e-74 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024937 [exp] 224 / 4e-69 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 188 / 3e-54 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 186 / 1e-53 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 186 / 2e-53 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 185 / 8e-53 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170400 [exp] 265 / 2e-84 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 251 / 5e-79 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 234 / 1e-72 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 230 / 3e-71 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G015700 [exp] 187 / 2e-54 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 187 / 3e-54 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 186 / 7e-54 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 186 / 1e-53 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 177 / 2e-50 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G161600 [exp] 174 / 3e-49 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10011783 pacid=23165555 polypeptide=Lus10011783 locus=Lus10011783.g ID=Lus10011783.BGIv1.0 annot-version=v1.0 ATGGATTCAGATCAGGGCAAGCTTTTCGTCGGTGGGATTTCTTGGGAGACGAGTGAAGATAAGCTCAAAGAGCACTTCGGTCAGTACGGCGATGTACTTC AGACTGCCGTTATGCGGGACGTTGAGGCAAAAAGAGCATTGTCGAGAGAGGAGCAGCAAAGCAATGTCAAACCTAGTAATTTAAATTCTGCTAGAAGCAG TGGTGGTGGTAGTGGTGGATACACTAAGACCAAGAAGATCTTTGTTGGTGGTTTGCCTCCCTCATTGACTGAAGATGATTTCCGTCAGTATTTTGAAGCT TATGGCCATGTTACTGACGTAGTAATTATGTATGACCAAAACACACAACGCCCTCGTGGATTTGGATTTATTTCCTTTGATTCCGAGGATTCAGTTGATC AGGTGTTGCATAAGACATTTCATGATTTGAGCGGGAAGCAAGTTGAAGTGAAGAGGGCTCTTCCTAAAGATGCCAATCCTGGTGGTGGCAGTCGCCCCAT GGGTGGTAATGCTGCTGGTGCAGGTGGTGGGGGAGGTTATCAAAGCTATGGTGCTTCTGGTGGGAATGCAAATTCATATGACGGCAGAATGGATTCGAGT AGGTATATGCAACCCCAGACTGCTGGAGGTGGCTTTCCTCCTTATGGGTCGTCTGGGTACGGTACCCCCGGGTATGGCTATGGCACTGCAAGTAATGGAG TTGGATATGGTGGATACGGAGGTTACGGTGGTAGTGGTGGATATGGGGCCCCTGCAGGTGCACCTTATGGAAACCCCAATGTCCCAAATGCTGGATATGG TAGTGGTCCACCTGGTGCTCCTAGGAGTTCATGGAATAGCCCAGCTCCCTCTGGTTACGGAGCTATGGGCTATGGAGGTGCTGCATCATGGGGTGCAAGT CCAGGTGCTGGTAGCGGTGGCTCAGGTTCAACTCCAACAGGTCAAACACCTACTGGACCGGGTGGTTATAATCAAGGATATGGATATGGTAGCTATGGAG CAAATGATGGATCTTATGGGAACCCTGCTGGGTATGGTGCTGTTGGAGGACGTTCTGGTGGTACTCCAAATAGCACTCCTGGAGAACAACAGGGAAACAG CGGAGGCTATGCGTCAGGTGGTTATGGTGATGCAAATGGGAATTCAGGATATGGTAATTCAGCATGGAGATCTGAGTCCTCGCAAGGTTCGGGGAATTAT GCTACTCAAGGAAATGGCGTTGCTTATGGTGGTGGTTACGGTAGTGCTCCAGCCCGACAAGCACAACAACAGTGA
AA sequence Show only first row Show all	>Lus10011783 pacid=23165555 polypeptide=Lus10011783 locus=Lus10011783.g ID=Lus10011783.BGIv1.0 annot-version=v1.0 MDSDQGKLFVGGISWETSEDKLKEHFGQYGDVLQTAVMRDVEAKRALSREEQQSNVKPSNLNSARSSGGGSGGYTKTKKIFVGGLPPSLTEDDFRQYFEA YGHVTDVVIMYDQNTQRPRGFGFISFDSEDSVDQVLHKTFHDLSGKQVEVKRALPKDANPGGGSRPMGGNAAGAGGGGGYQSYGASGGNANSYDGRMDSS RYMQPQTAGGGFPPYGSSGYGTPGYGYGTASNGVGYGGYGGYGGSGGYGAPAGAPYGNPNVPNAGYGSGPPGAPRSSWNSPAPSGYGAMGYGGAASWGAS PGAGSGGSGSTPTGQTPTGPGGYNQGYGYGSYGANDGSYGNPAGYGAVGGRSGGTPNSTPGEQQGNSGGYASGGYGDANGNSGYGNSAWRSESSQGSGNY ATQGNGVAYGGGYGSAPARQAQQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10011783 [exp]	0	1
AT5G25940			early nodulin-related (.1)		Lus10019434 [exp]	2.6	0.9538
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10023740 [exp]	6.2	0.9150
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10005460 [exp]	6.7	0.9413
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	7.1	0.9440
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Lus10031907 [exp]	7.5	0.9341
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	8.1	0.9436
AT5G37290			ARM repeat superfamily protein...		Lus10013386 [exp]	9.9	0.9294
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	10.0	0.9413
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	11.2	0.9288
					Lus10011266 [exp]	12.0	0.9165

Compare expression of checked genes

Lus10011783 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.