Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23530 1230 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23510 1225 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23470 622 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 603 / 0 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23460 238 / 5e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G33110 101 / 8e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G33120 94 / 2e-20 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G76090 49 / 1e-05 SMT3 sterol methyltransferase 3 (.1) AT5G13710 48 / 2e-05 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023741 [exp] 1569 / 0 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10022684 [exp] 92 / 1e-19 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10014230 [exp] 92 / 1e-19 AT4G33110 508 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023995 [exp] 44 / 0.0003 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10009537 [exp] 43 / 0.0009 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G170300 [exp] 1311 / 0 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 1291 / 0 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067800 [exp] 640 / 0 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 636 / 0 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067700 [exp] 624 / 0 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 624 / 0 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.018G060000 [exp] 96 / 4e-21 AT4G33110 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G077000 [exp] 58 / 1e-08 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.018G018900 [exp] 51 / 2e-06 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.001G263700 [exp] 46 / 8e-05 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02353 [flax] [poplar] CMAS Mycolic acid cyclopropane synthetase
Representative CDS sequence Show only first row Show all	>Lus10011784 pacid=23165556 polypeptide=Lus10011784 locus=Lus10011784.g ID=Lus10011784.BGIv1.0 annot-version=v1.0 ATGATGGAGCTGTTTGAGACACTTGGAGTTGAGATGGAGCTGTCTGACATGTCATTCTCAGTCAGTTTGGAGGAAGGGAAAGGGTGTGAATGGGGCAGTA GAAATGGCTTGTCAGGTTTGTTTTCACAGAAGAAGAATGCACTCAATCCCTACTTCTGGCAAATGATCCGTGACATCCTCAGATTCAAAGATGATGTTCT TAGTTACATTGAGATGGTTGAGAACAATCCGGATATGGATCAAAGCGAAACACTGGGGCAGTTCATCAAGTCAAGGGGCTACTCTGAGATGTTTCAGAAG GCTTATCTCGTTCCAATGTGTGGCTCAATATGGTCTTGTCCTTCCGAAGGAGTTATGAACTTCTCTGCCTTCTCAGTGCTCTCTTTCTGCCGGAATCACC ATTTACTTCAGCTGTTAGGCAGGCCACAGTGGCTGACTGTCAAAGGAAGGTCACATTCATATGTCAACAAGGTTAGGGAATATCTGGAGCAATTTGGATG CCAGATAAGGACTAATTCTGAGGTGGTGTCTATTTCTGTTCCCAGTACCGATGACGGCTGCACACTAGTATGTAAAGATGGTTCTCAAGAGCTATTCGAT GGCAGCATAGTGGCTGTTCATGCTCCCGATGCACTCAAGATACTTGGAGAGCAAGCAACATTTGATGAAGCACGAGTTCTCGGAGCTTTCCAGTATATGT CAAGTGATATCTACCTTCACCTTGATACCAAATTCATGCCTCGGAATCCAGCTGCATGGAGTGCCTGGAATTTTTTAGGGAGTACAGAAACTAAAGTCTG CCTCACTTACTGGCTCAACATCCTTCAGAATCTTGGGGAAACAAACCAACCTTATCTCGTGACACTCAATCCAGATAATCCACCTCAGAAAACTTTACTG AAATGGAGAACTAGCCATCCAGTCCCTTCTGTTGCAGCTTCAAAAGCTGCAAATGAGCTTAACAATATTCAAGGCAAAAGGGGGATTTGGTTTTGTGGAG CATACTTGGGTTATGGTTTCCATGAAGATGGATTGAAGTCTGGCTTGCTTGCTGCCAATAGTTTTCTTGGGAAGAGCTGTAATATTCTCAGCAACCCGAA ACACATGGTCCCATCTTGGTCAGAAACTGCAGGACGCCTATTTGTTACTCGGTTTCTTGGACAGTATATTTCTTCTGGCAGTTTGATCTTGTTGGAGGAA GGAGGCACAATGTTCACCTTTGAAGGAACTGGAAAGAAGTGTTTCTTGAAAACTGTTCTGAGAATCCACAGTCCACAATTTTACTGGAAGATAATGACAC AGGCTGATTTAGGCCTGGCTGATGCATATATCAATGACGATTTCTCCTTTGTAGATAAGGACGAAGGACTTCTAAATTTCTTAATGGTTCTGATTTTGAA TAGAGATACCAACAAAACAACATCCGAATTGAGCAAGAGAAGAGGCTGGTGGACTCCTATGTTGTTCACAGCAAGTATTGCATCGGCAAAGTTCTTCCTT CACCATGTTTCGAGGCAGAACACACTTACTCAAGCTCGGAGGAATATCTCTCGTCATTATGACTTGAGTAATGACCTATTCAGATTGTTCTTGGATGACA CAATGACTTACTCCTGTGCCGTGTTCAAGTCGGAAGAAGAGGACTTGAGAGCTGCACAGATGAGGAAGATCTCACTTCTGATTGAGAAAGCGAAAATCAG TAAAGGGGAGGAAGTTCTGGAGATAGGTTGTGGGTGGGGCACATTAGCCATTGAAGTTGTAAGAAGAACTGGATGCAAGTATACAGGCATCACTCTTTCT GAAGAGCAACTAAAGTATGCAGAGATCAAAGTCAAGGAAGCTGGACTTCAGGATCGAATCAAGTTTATTCTCTGTGACTATCGCCAACTGTCTAAACACT ACAAGTTTGACAGGATCATATCTTGTGAAATGATCGAAGCTGTTGGGCATGAATTCATGGAAGATTTCTTCGGCTGCTGCGAATCGGCTCTGGCAGAAAA CGGACTTCTTGTTCTTCAGTTTATTTCGATACCGGAAGAAAGATATGATGAGTACAGGAGAAGTTCAGATTTCATAAAAGAATACATATTCCCTGGTGGA TGCTTGCCTTCATTGGCTAGGATTACCACAGCCATGGCTGCTGCATCAAGGCTCTGCGTGGAGCAAGTGGAGAACATAGGAATCCATTACTACAAAACCC TGAGACACTGGAGAACAAATTTCTTGGCAAAAAGGAGCAAAATTATGGGGCTCGGATTCGACGAAAAGTTCATCAGAACGTGGGAGTACTACTTTGACTA CTGTGCAGCTGGGTTCAAGACTCACACGCTAGGAACTTACCAGGCAAGAAAGTTTCCATTTTTAGTTTCTTCGCAACACAATCTCTCATAA
AA sequence Show only first row Show all	>Lus10011784 pacid=23165556 polypeptide=Lus10011784 locus=Lus10011784.g ID=Lus10011784.BGIv1.0 annot-version=v1.0 MMELFETLGVEMELSDMSFSVSLEEGKGCEWGSRNGLSGLFSQKKNALNPYFWQMIRDILRFKDDVLSYIEMVENNPDMDQSETLGQFIKSRGYSEMFQK AYLVPMCGSIWSCPSEGVMNFSAFSVLSFCRNHHLLQLLGRPQWLTVKGRSHSYVNKVREYLEQFGCQIRTNSEVVSISVPSTDDGCTLVCKDGSQELFD GSIVAVHAPDALKILGEQATFDEARVLGAFQYMSSDIYLHLDTKFMPRNPAAWSAWNFLGSTETKVCLTYWLNILQNLGETNQPYLVTLNPDNPPQKTLL KWRTSHPVPSVAASKAANELNNIQGKRGIWFCGAYLGYGFHEDGLKSGLLAANSFLGKSCNILSNPKHMVPSWSETAGRLFVTRFLGQYISSGSLILLEE GGTMFTFEGTGKKCFLKTVLRIHSPQFYWKIMTQADLGLADAYINDDFSFVDKDEGLLNFLMVLILNRDTNKTTSELSKRRGWWTPMLFTASIASAKFFL HHVSRQNTLTQARRNISRHYDLSNDLFRLFLDDTMTYSCAVFKSEEEDLRAAQMRKISLLIEKAKISKGEEVLEIGCGWGTLAIEVVRRTGCKYTGITLS EEQLKYAEIKVKEAGLQDRIKFILCDYRQLSKHYKFDRIISCEMIEAVGHEFMEDFFGCCESALAENGLLVLQFISIPEERYDEYRRSSDFIKEYIFPGG CLPSLARITTAMAAASRLCVEQVENIGIHYYKTLRHWRTNFLAKRSKIMGLGFDEKFIRTWEYYFDYCAAGFKTHTLGTYQARKFPFLVSSQHNLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10011784 [exp]	0	1
AT1G57750		MAH1, CYP96A15	MID-CHAIN ALKANE HYDROXYLASE 1...		Lus10002523 [exp]	4.9	0.8820
AT3G51870			Mitochondrial substrate carrie...		Lus10027789 [exp]	6.6	0.9007
AT1G04420			NAD(P)-linked oxidoreductase s...		Lus10028045 [exp]	16.7	0.8455
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	21.4	0.8786
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	22.3	0.8786
AT5G42030		ABIL4	ABL interactor-like protein 4 ...		Lus10023654 [exp]	24.9	0.8708
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Lus10001355 [exp]	25.0	0.8715
AT3G21300			RNA methyltransferase family p...		Lus10009743 [exp]	26.2	0.8569
AT2G43030			Ribosomal protein L3 family pr...		Lus10013640 [exp]	27.1	0.8779
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	35.0	0.8738

Compare expression of checked genes

Lus10011784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.