Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33420 1222 / 0 Protein of unknown function (DUF810) (.1) AT1G04470 1151 / 0 Protein of unknown function (DUF810) (.1) AT2G25800 618 / 0 Protein of unknown function (DUF810) (.1) AT2G20010 565 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT5G06970 331 / 7e-98 Protein of unknown function (DUF810) (.1) AT4G11670 182 / 6e-47 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023742 [exp] 1682 / 0 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10034947 [exp] 609 / 0 AT2G20010 1236 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008431 [exp] 360 / 2e-114 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 342 / 1e-101 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 304 / 3e-93 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008663 [exp] 314 / 4e-91 AT5G06970 1449 / 0.0 Protein of unknown function (DUF810) (.1) Lus10012970 [exp] 283 / 5e-86 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10008430 [exp] 273 / 2e-82 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 272 / 4e-82 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068000 [exp] 1311 / 0 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 1285 / 0 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.006G238200 [exp] 657 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 620 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G085900 [exp] 577 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.001G030100 [exp] 328 / 5e-97 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 216 / 9e-58 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10011785 pacid=23165550 polypeptide=Lus10011785 locus=Lus10011785.g ID=Lus10011785.BGIv1.0 annot-version=v1.0 ATGCTCAAGAGATCTCCGTCGAGGAGAATGTCAAGCTTTGGAGGTGGATTCACGGGTGGTGGTGGCGGAGGAAGCTTCAACGGCGGAAGCAGTGGAGGTG GAATGAATGGGGGTTCTTCTGCGCCAACCTCTCCAAGACCGGTTGCGAAAGACCCTAATGCGCACCCTTGTCGGCCAAGGAGACGAGCAGAGACAATAAT ATTACCACTAGAGCTGCTCCGCCATTTAAAACCATCGGAGTTCAACGACGGTCCAGAGTATCACGTATGGCAAAGACGACAACTCAAAGTGTTAGAGAAC GGGCTTTTAATCTATCCATCCGTCCCGGTCGACAAATCCAACACCCACGCCGTCCGTCTACGTGAAATCATACGTTCAAGCGAGACCCGACCCGTCGACA CAAGCAAAAACTCCGAGACCATGAGAGCACTTTGCAACACCGTAGTCTCCCTTTCATGGAGGAGCACAAATAGCAACGCCACCGACGTTTGCCACTGGGC TGACGGGTACCCACTCAACATCAACATCTACATTGCCCTACTTCGCTCCACGTTCGACCTTAGGGAAGAGACCATGGTTCTGGACGAGGTGGACGAGCTT ATGGAGCTAATGAAGAAGACATGGACCACCCTTGGGATTAGTCGTCCGATTCACAATCTTTGCTTCACTTGGGTTTTGTTCCAGCAATATGTATTGACTT CCCAATCCGAACCGGACTTGCTTTACGCAGCGCACACCATGTTATCGACGGAAGTCGCCAGTGACTCGAAAAGGGTTGACAGGGAAGCTCTGTATGTAAA GCTTTTATCTTTTATGTTGGAGTCGATGCAAGGTTGGGCTGAGAGGAGGCTGCTTCACTACCATGACTATTTCCAGAGAGGCACTGTTGTTCTCATTGAG AATCTGCTGCCATTAGCGTTATCAGCGTCCAGGATTTTAGGGGAAGATGTTTCAATCGTTGAAGGAACGATGGGGAATGAAAAGAGATCATCATCTTCCA CTAGGATGGTTGTGGATTTGTCCGAGGATCGAGTTGGCGATTACATTCGAGCTTCAATCAAGAATGCTTTTGCTAAGATCATTGAAACTGGAAGCTACAA GAGTACTAGTTTGGAAGTGAAAGATGAGGCGACTGAGGCATTACTTCAATTGGCTAAAGAGACAGAGGAATTGGCAATGAGGGAAAGGGAATGTTTTAGT CGTATACTGAAGAAATGGAACCGAGGTGCTGCTAGTATTGCATCTGTGACTCTACATCAATGCTATGGAGCTGTATTGAAACAATATCTAGCTAGCGTGA CAGTGTTGAATCAGGAAACAGTAGAAGTCCTCCACAGGGCTGCCAAACTTGAAAAGGCAATGGTTCAAATGATAGTGGAGGACTCTGAGGAGTGTGAAGA TGGAGGCAAGAACATCGTCAGAGAGATGGTTCCCTACGAGGTTGATTCAGTCATATTGAAACTTGTTAAACAATGGATTGATGAGAGGTTGAAGATAGGC GGCGAATGCGTCCTTCGAGCCAAAGAGTCTGAGACATGGAATCCCAAGTCCAAAAATGAGCCTTATGCTCAATCAGCTGTGGAATTGATCAAAATAGCCA CTGAAACGGTGGAAGAATTCTTCCAAACGCCTATTGGGATCACAGACGACCTCATTTGCGCCCTTGCAGAAGGTCTTGAACAGCTGTTCATGGAATACGC CAACTTTGTATCAACTTGTGGATCCAAACAGAGCTATATTCCAACTCTTCCTCCTTTAACCAGATGCAACCGTGACTCCAAGTTCTTTAAACTGTGGAAA AAAGCAGCTCCTTGCACCATGTCTGTGGAAGATCTTCACCAAAATGGAATCAATGAAGTGCACCATCCGCGACCATCAACTAGTCGTGGAACGCAACGCC TTTACATTCGACTCAACACGTTGCATTACCTTGTTTCTCACCTACAGGCACTTGACAAGACCCTTGCATTGGCTCCAAGATATAATTCAGCCAGAACCCG TCATGCCAGTAGCAGAAGGCAACACAGTATCTCCTCTTACTTCGAACAAGCCCACACCGCCATCCAATCTGCCTGCCAACATGTATCAGAAGTGGCTGGT TATCGCTTGATATTCCTCGACTCCAGCTCCGTGATATACGAGTCTCTTTATGTGATTGATGTAGCCAATGCAAGAATCAAACCAGCACTGAGAATCCTCA AGCAGAATCTCACTCTCATGAGTGCAATTCTCACAGATCGAGCTCAATCTCTGGCAATGAAAGAAGTAATGAAGGCCACGTTCGAGGCCTTTCTGATGGT TCTACTTGCAGGTGGAGGCTCCAGGGTGTTATACAGAACTGATCATCCTATGATTGAGGAGGATTTCCAGAGCTTGAAGCGCATGTTCTGCACATGTGGT GAAGGGCTGATGAATGAAGACCTTGTGGAGAGGGAAGGCGAGATAGTTGAAGGTGTCGTCACATTGATGGGAGAATCTACCGAGCAATTAATGGAAGATT TCAGCGTTGCTGCCTGTGAGACAAGCGGTGTAGGAGTGTTGAGTTCGGGTCAGAAACTGCCAATGCCACCAACAACAGGAAGGTGGAATAGAAGGGATCC CAACACAATCTTGAGAGTTTTATGCCACAGGAACGACAGAGTGGCCAATTTATTCCTCAAGAAATCTTTCCAGCTTGCCAAAAGGAAGTGA
AA sequence Show only first row Show all	>Lus10011785 pacid=23165550 polypeptide=Lus10011785 locus=Lus10011785.g ID=Lus10011785.BGIv1.0 annot-version=v1.0 MLKRSPSRRMSSFGGGFTGGGGGGSFNGGSSGGGMNGGSSAPTSPRPVAKDPNAHPCRPRRRAETIILPLELLRHLKPSEFNDGPEYHVWQRRQLKVLEN GLLIYPSVPVDKSNTHAVRLREIIRSSETRPVDTSKNSETMRALCNTVVSLSWRSTNSNATDVCHWADGYPLNINIYIALLRSTFDLREETMVLDEVDEL MELMKKTWTTLGISRPIHNLCFTWVLFQQYVLTSQSEPDLLYAAHTMLSTEVASDSKRVDREALYVKLLSFMLESMQGWAERRLLHYHDYFQRGTVVLIE NLLPLALSASRILGEDVSIVEGTMGNEKRSSSSTRMVVDLSEDRVGDYIRASIKNAFAKIIETGSYKSTSLEVKDEATEALLQLAKETEELAMRERECFS RILKKWNRGAASIASVTLHQCYGAVLKQYLASVTVLNQETVEVLHRAAKLEKAMVQMIVEDSEECEDGGKNIVREMVPYEVDSVILKLVKQWIDERLKIG GECVLRAKESETWNPKSKNEPYAQSAVELIKIATETVEEFFQTPIGITDDLICALAEGLEQLFMEYANFVSTCGSKQSYIPTLPPLTRCNRDSKFFKLWK KAAPCTMSVEDLHQNGINEVHHPRPSTSRGTQRLYIRLNTLHYLVSHLQALDKTLALAPRYNSARTRHASSRRQHSISSYFEQAHTAIQSACQHVSEVAG YRLIFLDSSSVIYESLYVIDVANARIKPALRILKQNLTLMSAILTDRAQSLAMKEVMKATFEAFLMVLLAGGGSRVLYRTDHPMIEEDFQSLKRMFCTCG EGLMNEDLVEREGEIVEGVVTLMGESTEQLMEDFSVAACETSGVGVLSSGQKLPMPPTTGRWNRRDPNTILRVLCHRNDRVANLFLKKSFQLAKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33420			Protein of unknown function (D...		Lus10011785 [exp]	0	1
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	1.4	0.9687
					Lus10010270 [exp]	2.8	0.9649
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	6.0	0.9433
AT3G05670			RING/U-box protein (.1)		Lus10007973 [exp]	6.6	0.9410
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	8.0	0.9518
					Lus10020455 [exp]	8.1	0.9621
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	9.5	0.9431
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	10.2	0.9313
AT3G61510		AT-ACS1, ACS1	ARABIDOPSIS THALIANA 1-AMINOCY...		Lus10007910 [exp]	12.4	0.9505
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	12.6	0.9439

Compare expression of checked genes

Lus10011785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.