Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 802 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 748 / 0 Major facilitator superfamily protein (.1) AT2G40460 574 / 0 Major facilitator superfamily protein (.1) AT3G54140 512 / 1e-176 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 508 / 2e-174 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 489 / 1e-167 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 485 / 1e-165 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 440 / 9e-149 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 414 / 1e-137 Major facilitator superfamily protein (.1) AT2G37900 402 / 2e-133 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023743 [exp] 1135 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10008232 [exp] 749 / 0 AT5G46050 729 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10003614 [exp] 749 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 742 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 727 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 681 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 517 / 6e-178 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 511 / 1e-175 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 502 / 4e-172 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068100 [exp] 970 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 969 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258900 [exp] 811 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 773 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 583 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 509 / 4e-175 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 493 / 4e-169 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 491 / 3e-168 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 486 / 3e-166 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 485 / 7e-166 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10011786 pacid=23165512 polypeptide=Lus10011786 locus=Lus10011786.g ID=Lus10011786.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCAATGGAAGGAGGTGCTGAAAATGACTACACACAAGATGGAACAGTGGATCTCAAAGGCAACCCAGTTCGCCGTTCAAAGCGTGGTGGTT GGCGAGCTTGCTCTTTCGTTGTTGTATATGAGGTGTTTGAAAGGATGGCGTACTACGGGATATCGACAAATTTGGTGATATACTTAACCAAAAAGCTGCA TCAAGGAACTGTTAAATCCTCCAATAACGTCACCAATTGGGTCGGCACCATTTGGATGACTCCTATCTTGGGTGCCTACGTCGCCGACGCCCACCTCGGC CGTTACTGGACTTTCGTCTCCGCCTCCCTCATCTACCTCTCCGGGATGTCGCTACTGACGCTAGCGGTTTCACTTCCGGCGCTGAGGCCGCCGCACTGCA CAGAGGCAGACGTGAGCAAGTGCCACAAGGCTTCCTCTTTACAGCTGGGAGTCTTCTTCGGGGCACTCTACATACTTGCCATCGGCACTGGAGGGACAAA GCCCAACATCTCGACCATAGGGGCGGACCAGTTCGACGATTTCGAGCCCAAGGAGAAGAGGCACAAGCTCTCATTCTTCAACTGGTGGATGTTCAGCATC TTCTTCGGGACTCTGTTCGCCAACACGGTTCTGGTATACATACAAGATAATGTCGGGTGGAGCATCGGGTACGGGTTGCCTACTTTGGGCCTGCTCATAT CCATCGTCATATTCGTTGCTGGAACCCCCTTTTATAGGCACAGAGTTCCGAGCGGGAGCCCTTTTAATAGGATGGCTAAGGTGATTGTGGCGGCTGGGAG GAAATGGAAAGTTGATGTTCCCAGTGATCCTAAGGAGTTGTATGAGCTTGATTTGGATGAGTATGCTAAAGGGGGCAAGTTCAGAATTGATTCTACTCCA TCACTCAGGTTTTTAAGCAAAGCAGCGGTGCAAACAGGGTCAGATGGAGCATGGCTGTTGTGCCCAGTGACACAAGTAGAAGAAACAAAGCAGATGATGC GAATGATACCAATTCTGGTAGCAACATTCATTCCCAGCACAATGATTGCTCAAGTCAATACCTTGTTCGTCAAGCAAGGAACAACCCTTGACCGACAGAT CAACAGCTTCCACATCCCTCCTGCCAGTTTATCAGGATTTGTCACGCTCTCCATGCTCATCTCTGTCGTATTATACGATAGATTCTTCGTCCCTGTAGTG AGGAAATGGACCAAGAACCCCCGAGGTATCACACTTCTTCAGAGGATGGGAATCGGGCTGGTTTTCCATATTGTCATAATGATGGTGGCATCGCTAACTG AAAGGCACAGGTTGAGCGAAGCAAGGAGGTACAACGTCGTCGAAAATGGAGGCCAGATTCCTCTGTCGATTTTTGTATTGCTCCCTCAGTTTTTACTGAT GGGGACTGCTGATGCTTTCTTGGAAGTGGCCAAGATTGAGTTCTTCTACGATCAGGCTCCGGAGAGCATGAAGAGCCTTGGCACTTCATACTCCACCACT AGCCTTGGCATTGGCAACTTCATTAGCAGTTTCCTTCTGTCCACCATTTCTGATATAACCAAGAGGCATGGCCACAAGGGTTGGATCAGGAACAACTTGA ATGCTTCCCATCTGGACTACTACTATGCGTTTTTCGCAGTGCTTAACTTCTTGAACTTGGGCTTCTTCTTGGTTATGATTAGGTTCTATGTTTACAAGGC TGAAGTTTCGGATTCTATGCAAGTTCTAGCTGAAGAGTTGAAGCAGGGGACTCAGTTGAGGGAATATTCATCATCATCTCCCAACCAACAACTTGTATCT ACAAAGTGA
AA sequence Show only first row Show all	>Lus10011786 pacid=23165512 polypeptide=Lus10011786 locus=Lus10011786.g ID=Lus10011786.BGIv1.0 annot-version=v1.0 MASSMEGGAENDYTQDGTVDLKGNPVRRSKRGGWRACSFVVVYEVFERMAYYGISTNLVIYLTKKLHQGTVKSSNNVTNWVGTIWMTPILGAYVADAHLG RYWTFVSASLIYLSGMSLLTLAVSLPALRPPHCTEADVSKCHKASSLQLGVFFGALYILAIGTGGTKPNISTIGADQFDDFEPKEKRHKLSFFNWWMFSI FFGTLFANTVLVYIQDNVGWSIGYGLPTLGLLISIVIFVAGTPFYRHRVPSGSPFNRMAKVIVAAGRKWKVDVPSDPKELYELDLDEYAKGGKFRIDSTP SLRFLSKAAVQTGSDGAWLLCPVTQVEETKQMMRMIPILVATFIPSTMIAQVNTLFVKQGTTLDRQINSFHIPPASLSGFVTLSMLISVVLYDRFFVPVV RKWTKNPRGITLLQRMGIGLVFHIVIMMVASLTERHRLSEARRYNVVENGGQIPLSIFVLLPQFLLMGTADAFLEVAKIEFFYDQAPESMKSLGTSYSTT SLGIGNFISSFLLSTISDITKRHGHKGWIRNNLNASHLDYYYAFFAVLNFLNLGFFLVMIRFYVYKAEVSDSMQVLAEELKQGTQLREYSSSSPNQQLVS TK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10011786 [exp]	0	1
AT1G63670			Protein of unknown function (D...		Lus10002008 [exp]	7.1	0.8925
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Lus10014658 [exp]	12.6	0.9111
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10018422 [exp]	12.7	0.8956
					Lus10018816 [exp]	15.6	0.9051
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10012923 [exp]	23.9	0.9031
AT2G19900		ATNADP-ME1	Arabidopsis thaliana NADP-mali...		Lus10012964 [exp]	24.1	0.9000
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10022441 [exp]	26.6	0.9019
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10019848 [exp]	27.9	0.9025
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10023743 [exp]	29.7	0.8385
					Lus10013906 [exp]	33.3	0.8122

Compare expression of checked genes

Lus10011786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.