Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34440 132 / 2e-39 MADS AGL29 AGAMOUS-like 29 (.1) AT3G66656 105 / 1e-28 MADS AGL91 AGAMOUS-like 91 (.1) AT5G60440 100 / 1e-25 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 94 / 1e-23 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 88 / 2e-21 MADS MADS-box transcription factor family protein (.1) AT1G65360 87 / 5e-21 MADS AGL23 AGAMOUS-like 23 (.1) AT1G47760 85 / 1e-20 MADS AGL102 AGAMOUS-like 102 (.1) AT1G01530 84 / 8e-20 MADS AGL28 AGAMOUS-like 28 (.1) AT5G51860 77 / 1e-17 MADS AGL72 AGAMOUS-like 72, K-box region and MADS-box transcription factor family protein (.1.2) AT1G28460 76 / 4e-17 MADS AGL59 AGAMOUS-like 59 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040832 [exp] 202 / 2e-66 AT2G34440 135 / 1e-40 AGAMOUS-like 29 (.1) Lus10016563 [exp] 178 / 4e-57 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10030663 [exp] 94 / 4e-24 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10030824 [exp] 93 / 9e-24 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10025872 [exp] 88 / 5e-21 AT5G60440 107 / 8e-27 AGAMOUS-like 62 (.1) Lus10035029 [exp] 84 / 5e-21 AT5G10140 89 / 7e-24 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10020511 [exp] 85 / 4e-20 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10012449 [exp] 83 / 2e-19 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10012545 [exp] 78 / 3e-19 AT3G61120 92 / 1e-24 AGAMOUS-like 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131100 [exp] 141 / 7e-43 AT2G34440 137 / 2e-41 AGAMOUS-like 29 (.1) Potri.001G251400 [exp] 105 / 1e-28 AT5G60440 112 / 3e-30 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 102 / 5e-27 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 100 / 2e-26 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1) Potri.009G045900 [exp] 98 / 1e-25 AT3G04100 121 / 2e-34 AGAMOUS-like 57 (.1) Potri.017G047300 [exp] 94 / 1e-23 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 93 / 4e-23 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 92 / 6e-23 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.017G040700 [exp] 87 / 3e-21 AT5G60440 122 / 5e-34 AGAMOUS-like 62 (.1) Potri.009G046100 [exp] 84 / 2e-20 AT5G60440 115 / 6e-32 AGAMOUS-like 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10011787 pacid=23165521 polypeptide=Lus10011787 locus=Lus10011787.g ID=Lus10011787.BGIv1.0 annot-version=v1.0 ATGGGAAGGCGAAAGATTGAAATGAAGATGTTGAACGACAAAAGCTGTCGGCAAGTGACGTTCTCTAAGCGTCGCACCGGCCTTTTCAAGAAGGCACATG AATTAGCAACACTTTGCGCCATCCAGATTGCCATCATGGTGTTCTCACCCGGCGGCAAACCCTTTTGTTTTGGGAGCCCCGACTTTGATCTCATATCCAA AAAGTTTCTTAATCAGGATCAAAGCCCTTGTGTAGATTTTTATAATAATGATAATAATAATTCTAGTGGCAGGGCGAGAAAGATGATGAATCAAAAATTG GATCTACTCCAACATCAGATTGATACAGAGAAAAAGAAAGGGGATACATTTAAGGAGAAAATGAAGAAACCTGCCACCAGTTTGGGGTTTATGAAGCTAG TAAAAAAGATGGGATTTGAGGAACTTACGAATATCAAGAATAGGTCGGTGAACCTCCAAAGAGAATTACAACGTCGAACTGATGAAATAGATGTTTTGTC GTCGTTGCTGCTATTGGAGGGGCAAACTCCTATAGTGAAAGAAGAGAATCGTGACTTCTCTTACTCTAATTAG
AA sequence Show only first row Show all	>Lus10011787 pacid=23165521 polypeptide=Lus10011787 locus=Lus10011787.g ID=Lus10011787.BGIv1.0 annot-version=v1.0 MGRRKIEMKMLNDKSCRQVTFSKRRTGLFKKAHELATLCAIQIAIMVFSPGGKPFCFGSPDFDLISKKFLNQDQSPCVDFYNNDNNNSSGRARKMMNQKL DLLQHQIDTEKKKGDTFKEKMKKPATSLGFMKLVKKMGFEELTNIKNRSVNLQRELQRRTDEIDVLSSLLLLEGQTPIVKEENRDFSYSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	0	1
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	3.2	0.9865
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10040325 [exp]	4.7	0.9222
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	4.7	0.9717
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	5.3	0.8772
					Lus10003825 [exp]	7.5	0.9615
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10031172 [exp]	7.9	0.8401
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	8.0	0.9344
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	8.7	0.9615
AT5G56990			unknown protein		Lus10029528 [exp]	9.7	0.9615
					Lus10038051 [exp]	10.7	0.9615

Compare expression of checked genes

Lus10011787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.