Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32580 276 / 2e-94 plastid developmental protein DAG, putative (.1) AT2G35240 276 / 3e-94 plastid developmental protein DAG, putative (.1) AT2G33430 268 / 4e-91 DAL1, DAL differentiation and greening-like 1 (.1) AT3G06790 143 / 6e-42 plastid developmental protein DAG, putative (.1.2) AT1G11430 141 / 2e-41 plastid developmental protein DAG, putative (.1) AT3G15000 123 / 6e-33 cobalt ion binding (.1) AT1G72530 107 / 8e-29 plastid developmental protein DAG, putative (.1.2) AT4G20020 96 / 1e-22 unknown protein AT3G20930 84 / 1e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G44780 82 / 8e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023744 [exp] 386 / 1e-137 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10016825 [exp] 145 / 3e-42 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10018398 [exp] 142 / 3e-42 AT1G11430 309 / 2e-108 plastid developmental protein DAG, putative (.1) Lus10007615 [exp] 143 / 4e-42 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10014696 [exp] 140 / 3e-39 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10043130 [exp] 134 / 1e-36 AT3G15000 284 / 6e-92 cobalt ion binding (.1) Lus10032618 [exp] 131 / 5e-36 AT3G15000 301 / 2e-99 cobalt ion binding (.1) Lus10032619 [exp] 126 / 2e-35 AT3G15000 223 / 3e-71 cobalt ion binding (.1) Lus10036589 [exp] 95 / 2e-22 AT4G20020 271 / 1e-87 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068300 [exp] 303 / 9e-105 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.008G169900 [exp] 298 / 6e-103 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.010G007200 [exp] 150 / 2e-44 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.011G032900 [exp] 147 / 1e-43 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.011G112200 [exp] 132 / 3e-36 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 129 / 5e-35 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.010G237200 [exp] 102 / 2e-25 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G022200 [exp] 101 / 6e-25 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G015100 [exp] 100 / 3e-24 AT4G20020 239 / 2e-74 unknown protein Potri.004G218650 [exp] 64 / 1e-11 AT4G20020 187 / 5e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011789 pacid=23165538 polypeptide=Lus10011789 locus=Lus10011789.g ID=Lus10011789.BGIv1.0 annot-version=v1.0 ATGGCTCAAACCCTAGCTCGTTCCTTCACCGTCTCTCGCCATCTCACCGTCTCCTCCCTCATCCCTAAACGCCTCTTCTCTTCTTCTTCCTCAGCCTTCA CTCGCCCTCCTTCTCCTTCTGCTCTTCTGTTCTCCCGTCGTTCCCTGCTCCCGATTACTCATGCCGTCCGCTCCATTATTCCCGAATATTCCACTCGCTT CACCACCATTCGATGCCGGGTCGATCGTGCCGGAAACTCTTACTCGCCGTTGAACTCCGGTTCTAACTTCAAAGACCGTCCTCCCAGTGAGATGGCCCCG CTTTTTCCTGGATGCGATTACGAGCACTGGCTTATCGTTATGGATAAGCCCGGCGGCGAGGGCGCCACCAAACAGCAGATGATCGATTGCTACATTAAGA CCCTATCTGTTGTCCTAGGAAGCGAGGAGGAGGCAAAGAAGAAGATCTACAATGTTTCGTGTGAGAACTATTTCGGATTTGGATGCGAGATTGATGAGGA GACTTCTAACAAACTAGAAGGGTTACCTGGTGTGTTGTTCGTGTTGCCGGACTCTTATGTTGATCCTGAATACAAAGACTATGGTGCTGAATTGTTTGTG AATGGGGAGATAGTCCAAAGGACCCCTGAGAGACAAAGGAGAGTTCAGCCTCAGCCTCAAAGATCGAATGACCGACCACGATACAATGACAGGACCAGAT ATGTGCGTCGCAGAGAGAACATGCGGTGA
AA sequence Show only first row Show all	>Lus10011789 pacid=23165538 polypeptide=Lus10011789 locus=Lus10011789.g ID=Lus10011789.BGIv1.0 annot-version=v1.0 MAQTLARSFTVSRHLTVSSLIPKRLFSSSSSAFTRPPSPSALLFSRRSLLPITHAVRSIIPEYSTRFTTIRCRVDRAGNSYSPLNSGSNFKDRPPSEMAP LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIKTLSVVLGSEEEAKKKIYNVSCENYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFV NGEIVQRTPERQRRVQPQPQRSNDRPRYNDRTRYVRRRENMR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32580			plastid developmental protein ...		Lus10011789 [exp]	0	1
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	1.0	0.9561
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039437 [exp]	2.8	0.9209
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10016750 [exp]	7.9	0.9113
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Lus10030595 [exp]	8.4	0.9353
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Lus10022444 [exp]	9.2	0.9064
AT1G04340			HR-like lesion-inducing protei...		Lus10021205 [exp]	10.4	0.9287
AT2G15270			unknown protein		Lus10002814 [exp]	12.0	0.9047
AT4G00585			unknown protein		Lus10012175 [exp]	12.2	0.9068
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	13.4	0.9116
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	14.0	0.9315

Compare expression of checked genes

Lus10011789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.