Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33440 209 / 5e-61 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33435 197 / 4e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G36690 128 / 9e-31 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) AT1G60900 127 / 3e-30 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023746 [exp] 1454 / 0 AT2G33435 209 / 2e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024026 [exp] 132 / 7e-32 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10035713 [exp] 126 / 2e-29 AT1G60900 640 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10037299 [exp] 120 / 1e-28 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068400 [exp] 637 / 0 AT2G33435 237 / 3e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G050400 [exp] 142 / 1e-35 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.004G040900 [exp] 141 / 3e-35 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.005G125500 [exp] 132 / 7e-32 AT4G36690 626 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.007G028500 [exp] 130 / 2e-31 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10011791 pacid=23165537 polypeptide=Lus10011791 locus=Lus10011791.g ID=Lus10011791.BGIv1.0 annot-version=v1.0 ATGACTGAAACTAGAAGCCAGGATGACAGAAAAGTTCATGGCAGGGAAAATGTTGATGACCAGCTTTTGGGAGATTCAGCAAAGAAGGAACGATATGTTG ATGGAAGGAGAGGTCAATATGAAAGGACAGATGATGCTGACCGGAGAAAGTCGCAGAAGCGTCCCTTTGATGGTTCTGGAAAGGAAACTGCAAAAAAGCA TTCTAGAGACTTGGTGGAAATAAGTAGACGTGTTGATGGGAGTAGGGGCAGATTCAAAAAAGATTTGGAGAAAACTGATAGAAGCAAGGAAAACGGTGGG AGGTCTGAAAAGGTTTCACGAAATGAAGTGCTAAAGAATCTGTCAAGAGATTATATGCAGAAGGACAGACATGTGGACAGGACTAGACGAAAAACTGAAA ATAGAAGCAAGCCCCGGGATAAAGTTCAAGATCTTGTAAAGAAACATGATGCTCCGGAAGGGTTTTGTCTAAATGCTTCTGACAGAGTTGATAGGAACGA AATATCAAAATCTCACTACAGAGAATCAAGCCTTAAAAGAAGGAGATCAAAGAGTAGAGAGCATAGGAAAACAGATCGAAGTTATGCGTCTATGTCATTG CGGACACAGAAGCACGAGTCTTTCGTTGGAAGAGGACATGACAGCCTCTCGTCTCATTCTAAAGGGAGGCCTGAGAGACAGCATCTTGATGAGGAAAAGA GGAAAACTATGAATGGATCAAGTGCCCAGTTTGCAGCAACACACAGTCCTGCTAGTGGGCTTGGTGGCTATTCCCCAAGGAAGAGAAAGAGTGAGGCGGC TGTTAAGACTCCGTCCCCCATCAAACGCTCACCTGAGAAGAAGAGTGCTAAATGGGATCTTGCGCCAAAAGGAAACAAGGAAACCTTGTCAGCCTCAATT CATGCTAATGATTTGCTATCTAATCAGCAATTATCTTCAATTATGCGTGATGTGATCAATACTGTTCCTATTTCTTCAGATGCTGGGCTCTCTGTGTTGG GGGCTTCAGCTAGCTCTTTGTTAAGAACTAAGAATATTTCCATTGAGTCCGTTCAACTAACACAATCTACTCGTCCGATACGTAGACTTTATGTGGAAAA TGTACCTGCCTCTGCTTCAGAGAAAGCTGTCATGGACTTTCTTAGTAACTCTTTGATTTCTTATGGTGTTAATCATGTACCAGGAACCCAACCATGTATA AGCTGCATTATCAACAAAGAAAAAGGCCAAGCGCTTGTTGAATTTCTGACACCTGAGGATGCTTCAGCAGCTCTTTCGTTTGATGGTTGGTCTTTCTCTG GCTGTACTATCAAAATCAGACGTCCCAAAGACTATGTTGAAGTGGCAATCGGTGAAGCAAAAAAGCCGGAGGCTGTAGCTCAGGCGATAACTGATGTCGT TATGGATTCACCTCACAAGCTCTTCATTGGTGGAATTCCAAATGTTCTTTCTTCCAAAATGTTTATGGAGATTGCTAGTGCTTTTGGACCTTTGAAGGGA TATCAGTTTCTCAACAATGAGGAATGTGATGGGCCACGCGCTTTCCTTGAGTATGCCGATCAGAACGTCACTCTTAAAGCTTGTGCTGGCTTAAATGGCA TGAAAATAGGAGGGCAAGTATTAACTGCAGTTCAAGCGGTGCCAGAGGCATCAGTGTTGGGAAGCAACGGAAGTCGAGTGTTTCATGGAATCCCTGAACA GGCAAAGCCACTTCTTGAGAAACCTACAGAAGTCTTGAAACTTATGAATGTGTTCAAAGCAGAGGTCCTTCCCTCGATGTCTGATCCAGAAATTGAGGAG GTACTGGAAGATGTACGAGTGGAATGTGCAAGGTTTGGTGCTGTAAAGTCGATTAATGTCGTCAGGCATACTGCAATTCATGACACTACCTCAGGAACAT GTTCTGGTTCTGACACTTTGGTGTCTGCTAGAGGTGAGGAAGGCTTAAAAACTGAAACCAACTCAATAACTGAGGCTGATAAAAAGCATAAAATGATTGA AGGCAGCAGCATCAGAAAGAGACCTGAGGATAATCTCAAGGTAGGTGAAGGTCTTCAACATTCAGGTGATAGTTCTGTGGGTGCTGAAGGCCCAGAGTCC ATCAATGTACACGATGATCCTAGAGACCCCCTTCAGCAAAGTTGCATCTACAAAACTGAAATAGATTGTACAGGCAGCAAATGGACCAGTGAGATTCACA TGTTGGAGATCACAACGGATAATGAACCAAAGACTGAAAAGCCGTCGAATGTGGTTGAAAGCAGAGAAGTGATTGCAGGTGCAACAGTTGAAACAAATAC AGAGAAGGGAGATGCTTTTTGCAATGACTCAACTCCTACTAGTTCAGATGCTCTCAAGGGCGAACAAGATGTTGAAAGTGGACGCGGTTTTGAAATAGGC AGTGTGTTGGTGGAGTTTAGAAGGACGGAAGCCTCCTGTATGGCAGCACACTGCTTGCACGGCAGATCATTTGATGATCGCAAGGTCACAGCGGAATATG TTCCTCTTGTCCTTTACATGGCTAAGTTCCAGAAACAACAGGGATGA
AA sequence Show only first row Show all	>Lus10011791 pacid=23165537 polypeptide=Lus10011791 locus=Lus10011791.g ID=Lus10011791.BGIv1.0 annot-version=v1.0 MTETRSQDDRKVHGRENVDDQLLGDSAKKERYVDGRRGQYERTDDADRRKSQKRPFDGSGKETAKKHSRDLVEISRRVDGSRGRFKKDLEKTDRSKENGG RSEKVSRNEVLKNLSRDYMQKDRHVDRTRRKTENRSKPRDKVQDLVKKHDAPEGFCLNASDRVDRNEISKSHYRESSLKRRRSKSREHRKTDRSYASMSL RTQKHESFVGRGHDSLSSHSKGRPERQHLDEEKRKTMNGSSAQFAATHSPASGLGGYSPRKRKSEAAVKTPSPIKRSPEKKSAKWDLAPKGNKETLSASI HANDLLSNQQLSSIMRDVINTVPISSDAGLSVLGASASSLLRTKNISIESVQLTQSTRPIRRLYVENVPASASEKAVMDFLSNSLISYGVNHVPGTQPCI SCIINKEKGQALVEFLTPEDASAALSFDGWSFSGCTIKIRRPKDYVEVAIGEAKKPEAVAQAITDVVMDSPHKLFIGGIPNVLSSKMFMEIASAFGPLKG YQFLNNEECDGPRAFLEYADQNVTLKACAGLNGMKIGGQVLTAVQAVPEASVLGSNGSRVFHGIPEQAKPLLEKPTEVLKLMNVFKAEVLPSMSDPEIEE VLEDVRVECARFGAVKSINVVRHTAIHDTTSGTCSGSDTLVSARGEEGLKTETNSITEADKKHKMIEGSSIRKRPEDNLKVGEGLQHSGDSSVGAEGPES INVHDDPRDPLQQSCIYKTEIDCTGSKWTSEIHMLEITTDNEPKTEKPSNVVESREVIAGATVETNTEKGDAFCNDSTPTSSDALKGEQDVESGRGFEIG SVLVEFRRTEASCMAAHCLHGRSFDDRKVTAEYVPLVLYMAKFQKQQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	0	1
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	1.0	0.9282
AT2G39580			unknown protein		Lus10005958 [exp]	1.4	0.8949
AT3G07610		IBM1	increase in bonsai methylation...		Lus10002051 [exp]	2.4	0.8422
AT4G21300			Tetratricopeptide repeat (TPR)...		Lus10008967 [exp]	4.5	0.8441
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	5.3	0.8457
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10008136 [exp]	5.5	0.8568
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	6.5	0.8381
AT2G16460			Protein of unknown function (D...		Lus10042073 [exp]	9.5	0.7927
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Lus10025061 [exp]	10.1	0.7882
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	10.2	0.8176

Compare expression of checked genes

Lus10011791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.