Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33450 176 / 8e-56 Ribosomal L28 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023747 [exp] 265 / 7e-91 AT2G33450 180 / 3e-59 Ribosomal L28 family (.1) Lus10006283 [exp] 108 / 1e-27 ND / Lus10017803 [exp] 61 / 1e-10 ND / Lus10003025 [exp] 60 / 4e-10 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10016946 [exp] 52 / 3e-07 ND / Lus10010883 [exp] 50 / 8e-07 ND / Lus10006887 [exp] 49 / 2e-06 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10027612 [exp] 49 / 2e-06 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10000293 [exp] 49 / 2e-06 ND 48 / 2e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068500 [exp] 185 / 2e-59 AT2G33450 202 / 8e-68 Ribosomal L28 family (.1) Potri.008G169800 [exp] 179 / 9e-57 AT2G33450 194 / 1e-64 Ribosomal L28 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00830 [flax] [poplar] Ribosomal_L28 Ribosomal L28 family
Representative CDS sequence Show only first row Show all	>Lus10011792 pacid=23165509 polypeptide=Lus10011792 locus=Lus10011792.g ID=Lus10011792.BGIv1.0 annot-version=v1.0 ATGGCGTCGGCGACAGCGGGCATGTTACTGGGGAATAACCCGAGTCTCCTCGTTCCAAGAACCAATCTTCGCTTCTCAACTCTGCATTCTTCTTCAAATT CCTCCGCCATTTCGGGACTGGGATTCCTCGGTTATCAATTTAGCGGCATCCGAATCTCCAACCACCTCAATTCGGCCAGACCCATCTCCGCTCCATTCAG GCCGGCTATCCAGCCCATCGTCGCCCGGAGGGTGTGTCCGTTTACAGGGAAGAAATCGAACAGGGCGAACAAGGTGTCCTTCTCAAACCACAAGACGAAG AAGCTTCAGTGCGTCAACTTGCAGTATAAGAAGCTTTGGTGGGAAGGCGGGAAGCGCTTCCTCAAGCTCCGTTTGTCCACTAAAGCTTTGAAGACCATCG AGAAGAATGGGATCGATGCTGTCGCTAAGAAGGCCGGCCTTGATCTTAGGAAGATCAAGGGCAGTTTTGTGTCTCGATTTGAAGTGCTTCAGGCGAAATT CCCAGATTCTACAAGTCTCGAGCAACATGTTCGTGCTTCATTTAGGACCATCTCGGAATTACATGAGCTGGCACATTCATCAGCACCAAATGTTTGGGCT CTCATTTGTTTCAGTTACATGATACACATGCATGTTTCTGATGCTACTGGGGAGGCAACATTCTTAGTTTTGGGCTACTTGGCAGATGTCATTATGCCTC TAACTGCTTCTCAGCTGTGTCGTGCGTTCCCTTTTGATGGCCCGGACGTGCCACCTCAGATTGAGATGGTTTGA
AA sequence Show only first row Show all	>Lus10011792 pacid=23165509 polypeptide=Lus10011792 locus=Lus10011792.g ID=Lus10011792.BGIv1.0 annot-version=v1.0 MASATAGMLLGNNPSLLVPRTNLRFSTLHSSSNSSAISGLGFLGYQFSGIRISNHLNSARPISAPFRPAIQPIVARRVCPFTGKKSNRANKVSFSNHKTK KLQCVNLQYKKLWWEGGKRFLKLRLSTKALKTIEKNGIDAVAKKAGLDLRKIKGSFVSRFEVLQAKFPDSTSLEQHVRASFRTISELHELAHSSAPNVWA LICFSYMIHMHVSDATGEATFLVLGYLADVIMPLTASQLCRAFPFDGPDVPPQIEMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33450			Ribosomal L28 family (.1)		Lus10011792 [exp]	0	1
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	2.0	0.9726
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	2.8	0.9750
AT2G33450			Ribosomal L28 family (.1)		Lus10023747 [exp]	3.5	0.9704
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10025799 [exp]	7.5	0.9654
AT5G65220			Ribosomal L29 family protein ...		Lus10000745 [exp]	7.5	0.9673
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	10.0	0.9664
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10027894 [exp]	10.4	0.9628
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10010639 [exp]	11.0	0.9663
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10043055 [exp]	11.7	0.9647
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10028194 [exp]	11.7	0.9572

Compare expression of checked genes

Lus10011792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.