Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28600 741 / 0 NPGR2 no pollen germination related 2 (.1) AT2G43040 549 / 0 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G27460 516 / 7e-175 NPGR1 no pollen germination related 1 (.1) AT3G11540 44 / 0.0005 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G06210 43 / 0.0009 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023748 [exp] 1399 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10008236 [exp] 733 / 0 AT4G28600 738 / 0.0 no pollen germination related 2 (.1) Lus10003618 [exp] 722 / 0 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 712 / 0 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 700 / 0 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10020725 [exp] 552 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029803 [exp] 543 / 0 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 533 / 0 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 526 / 8e-179 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169500 [exp] 1037 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 1003 / 0 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.002G259300 [exp] 839 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 583 / 0 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G016000 [exp] 573 / 0 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 565 / 0 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011793 pacid=23165523 polypeptide=Lus10011793 locus=Lus10011793.g ID=Lus10011793.BGIv1.0 annot-version=v1.0 ATGATGAAGTGTATGCGTTCCGGGGAGCAGTTCAGAGTGGATGATATGGCTGCTTCCTCTTCTGAGTCTTTGGCAACTAAAGACTATTCAGCAAGTGGAT ATTCCTCTCGTGCTGCTGAGCTTGATTCCAAGCTTGATAATAGCAACATTGAAGAAGCTGAGTCCTCTCTTCGCGAGAGCGGTTACCTTAATTATGAGGA AGCAAGAGCACTGTTAGGGAGGCTGGAGTATCAAAAGGGAAATATCGAAGGTGCACTTCATGTCTTTGAAGGAATTGACATATCCGCCGTCACTTCAAGG ATGAAAGTCAGTCTATCTAAGAAAGTGGAGCAGAATAGACGCCGGTCTCAGAGTGATCCTTCTCTAGCTATGTCTATGCATGCAATCACCTTGCTCCTCG AGGCTGTTCTTCTCAAAGCAAAATCATTGCAAGGTCTAGGAAGGTTTCAAGAGGCTGCTCAGTCTTGTAAAATAATTATGGATACTGTTGAGTCTGCACT GCCAGATGGTATATCCGAACAAGTTTCTGGCGACAACAAGCTGCAAGAAATTCTGAACAAAGCTGTGGAATTGCTTCCTGAGCTGTGTAAACTAGCTGGT GCACCTGAAGAAGCTATAGTGGCATATCGACGTGCCCTCCTCTATTACTGGAATCTAGACACAGAAACAACTGCTAGGATACAGAAAGAGTTTGCTATGT TCCTATTGTACAGTGGCACCGATGCGATCCCTCCAACATTGCGTTTCCAGATGGAAGGATCTTTCGTGCCAAGAAATAATATAGAAGAGGCAGTCCTTCT GTTACTGATTCTGTTAAGAAAATTTGCTCTCAGAAAGATTGGATGGGACCAATCAGTCATGGATCACCTATCTTTTGCGTTATCTGTATCTGGGGAATTA AGGTCCCTTGCTTATCAGGTGGAAGAGTTGCTTCCTGGCACTATAGATAGACAGGAGAGATTTTTCACACTGTCTCTTTGCTATCACGGAGATGGCGACA ACGAAGTTGCTTTAAATCTTCTGAGGAATTTCCTAAAAGACAGGGAGAATAAAAGCTGCACCATGGAACTGTTACTAGCTTCTAAGATCTGTGCAGAGAA TTCTTTGCGTGTTGATGAGGGGATTACATACGCCTGTAAAGCTCTATGCAACTCTGGAAGATGTGTCCAAATGGCAAGTGTTACAAACTGCTTGTTAGGT CTTCTACTATCAAATAAATCAAGATTGGTTGCCTCCGACTCTGAGAGGTTCTCAAAACAGTCTGAGACGATCGAGAAACTTGAGCTTGCTGAAAGAATGA TGAAACAGAAGGATCCGAACATCATATACTGCCTTAGTCTAGAAAATGCTGAGCAGAGGAAGTTAGATACTGCATTGTCTTATGCAAAGCAGGTTTTCAA ACTGGAAGCTGGGTCTTCAATAAGAAGTTATGTGCTTTTGGCTCGGATATTATCTGCTCAAAAACGGTTCATTGATGCCGAGACTGTGATCAATGCTGCG CTTGATCAGACTGGAAGGTGGGATCATGGGGAACTACTTCGAACAAAAGCAAAACTGCAAGTAGCACAGGGCCAGCTAAAGAGTGCAATTGAGACATACA CTCACCTTCTTGCCATTCTCCAAGTCCGAAACAAAAATTCAGGAATGGAGAAGAAACTGCTCTATAAGAGTAGCAGGAACCGTGATAGGAAACTGGAAAT GGAGACATGGCACGATCTAGCTAACGTATATACGGGTATGTCTCAATGGCGGGATGCTGAGGTGTGCCTTTCGAAATCCATGGCTATCAACCTGTATTCT GCATCAAGATGGCACTCCACAGGTGTACTGTATGAAGCGAAGGGAATGCAACAAGAAGCAGTGAAAGCGTATAAAGCAGCATTAGATGTTGAACCAAATC ATGTCCCAAGCCTGATATCAACTGCTTGTGTCCTAAAACGCGTTGGTGTAAACTCCCTGCCAGTCATTAAAAGCTTCTTGACAGATGCTCTTCGATTGGA CAAGCTGAACCATTCTGCATGGCACCAGCTTGGATTGATCTACAAGGCTGATGATTGTGCATCTGCACTTGATGCTATGGAGTGCTTTGAGGCTGCTGCG ATGCTGGAAGAAACTGCTCCGGTAGAGCCCTTCAGATGA
AA sequence Show only first row Show all	>Lus10011793 pacid=23165523 polypeptide=Lus10011793 locus=Lus10011793.g ID=Lus10011793.BGIv1.0 annot-version=v1.0 MMKCMRSGEQFRVDDMAASSSESLATKDYSASGYSSRAAELDSKLDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEGALHVFEGIDISAVTSR MKVSLSKKVEQNRRRSQSDPSLAMSMHAITLLLEAVLLKAKSLQGLGRFQEAAQSCKIIMDTVESALPDGISEQVSGDNKLQEILNKAVELLPELCKLAG APEEAIVAYRRALLYYWNLDTETTARIQKEFAMFLLYSGTDAIPPTLRFQMEGSFVPRNNIEEAVLLLLILLRKFALRKIGWDQSVMDHLSFALSVSGEL RSLAYQVEELLPGTIDRQERFFTLSLCYHGDGDNEVALNLLRNFLKDRENKSCTMELLLASKICAENSLRVDEGITYACKALCNSGRCVQMASVTNCLLG LLLSNKSRLVASDSERFSKQSETIEKLELAERMMKQKDPNIIYCLSLENAEQRKLDTALSYAKQVFKLEAGSSIRSYVLLARILSAQKRFIDAETVINAA LDQTGRWDHGELLRTKAKLQVAQGQLKSAIETYTHLLAILQVRNKNSGMEKKLLYKSSRNRDRKLEMETWHDLANVYTGMSQWRDAEVCLSKSMAINLYS ASRWHSTGVLYEAKGMQQEAVKAYKAALDVEPNHVPSLISTACVLKRVGVNSLPVIKSFLTDALRLDKLNHSAWHQLGLIYKADDCASALDAMECFEAAA MLEETAPVEPFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28600		NPGR2	no pollen germination related ...		Lus10011793 [exp]	0	1
AT3G05000			Transport protein particle (TR...		Lus10018981 [exp]	1.4	0.8567
AT5G11960			Protein of unknown function (D...		Lus10004444 [exp]	2.0	0.8446
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10043083 [exp]	2.4	0.8430
AT1G05170			Galactosyltransferase family p...		Lus10020042 [exp]	2.4	0.8315
AT1G54730			Major facilitator superfamily ...		Lus10029971 [exp]	4.6	0.8260
AT3G05000			Transport protein particle (TR...		Lus10033832 [exp]	5.9	0.8362
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	8.0	0.8367
AT2G02410			unknown protein		Lus10026272 [exp]	11.5	0.8107
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10041792 [exp]	12.6	0.8224
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10036507 [exp]	12.8	0.7603

Compare expression of checked genes

Lus10011793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.