Plant FIBer expression Database

Lus10011795 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023749
[exp]
87 / 8e-20 AT3G23450 / unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10011795 pacid=23165534 polypeptide=Lus10011795 locus=Lus10011795.g ID=Lus10011795.BGIv1.0 annot-version=v1.0
ATGGTGATGGGGGTAGTAGGTGGTGGGAGGGAAAGTAAGAGGCTTGCTCTCTTGTCATTGTTTTGCTTCCATGTTTTGGTAGCGGCTGTTTTTGCCAGGG
ATGTAGTCACTGTCGGGAGAGATGACGAGGAGGTCAAGTCCCTCATTGGCAAGGGCGGTGGCTTTGGAGGTGGTTTCGGTGCTGGTGCCGGAGTTGGTGG
TGGTTTTGGTGGCAGTGCTGGAGGAGGTGGAGGTTTTGGCGGTGGTGCTGGAGGTGGTGGCGACGCTGGTGCTGGAGGTGGTTTTGGGCAAGGTGGTGGC
ATTGGCGGCGGGATTGGCAAAGGTGGAGGACCCGGTGGTGGAATCAGGAAAGGTGGAGGCGCCGGTGGTGGTATCGGGAAAGGCGGAGGGCTCGGTGGCG
GGATAGGAAAGGGTGGCGGACTTGGTGGTGGAGTTGGGAAGGGTGGTGGGATCGGCAAAGGTGGTGGTGGAGGAGGTGTTGGTGGTGGGATTGGAAAAGG
AGTTGGCGGCGGTATCGGAAAAGGTGGAGGGCTCGGTGGTGGAGCTGGTGGTGGCATAGGTAAGGGAGGAGGATTGGGTGGCGGAATTGGAAAGGGCGGA
GGAGCTGGCGGCGGAATCGGTAAGGGAGGTGGAGTTGGTGGTGGTGCAGGTGGAGGAGCTGGTGGTGGCGCTGGTGGAGGGTTTGGAAAGGGTGGAGGAG
TTGGTGGAGGGATCGGCAAGGGAGGTGGAGTTGGTGGTGGAGCTGGCGGTGGTGCTGGTGGTGGCGCCGGCGGAGGGTTTTGCAAGGGCGGAGGAGTAGG
TGGAGGAATCGGCAAGGGAGGCGGAGTTGGGGGTGGAGTTGGCGGTGGTGTAGGTGGAGGAGCCGGTGGAGGAATCGGCAAGGGAGGCGTAGTTGGTGGT
GGAACTGGTGAAGGCGCAGGCGGAGGGTTTGGAAAGGGTGGAGGAGTAGGTGGGGGAATTGGCAAGGGAGGCGGAGTTGGTGGCGGAGCTGGAGGTGGTG
CAAGTGGGGGTGCTGGCGGAGGGTTTGGCAAGGGTGGAGGTGTAGGTGGAGGAATCGGCAAGGGAGGAGGTGTTGGTGGTGGAGCTGGCGGTGGATTTGG
CAAGGGTGGTGGTTTTGGAGGTGGATCTGGTGGTGGGTTTGGAAAGGGTGGAGGAATTAGTGGGGGTGGCGGAGGTGGAGGAGGGTTTGGCGGTGGTTCG
GGTGGTGGCATAGGCGGAGGATTTGGGAAAGGTGGTGGAGTTGGAGTTGGAGGTGGTGGTGGTGGGTTTGGAGGTGGAGGAGGCGGTGGATTCGGTGGTG
GTGGTGGTGGCGGTGGACATCAATAA
AA sequence
>Lus10011795 pacid=23165534 polypeptide=Lus10011795 locus=Lus10011795.g ID=Lus10011795.BGIv1.0 annot-version=v1.0
MVMGVVGGGRESKRLALLSLFCFHVLVAAVFARDVVTVGRDDEEVKSLIGKGGGFGGGFGAGAGVGGGFGGSAGGGGGFGGGAGGGGDAGAGGGFGQGGG
IGGGIGKGGGPGGGIRKGGGAGGGIGKGGGLGGGIGKGGGLGGGVGKGGGIGKGGGGGGVGGGIGKGVGGGIGKGGGLGGGAGGGIGKGGGLGGGIGKGG
GAGGGIGKGGGVGGGAGGGAGGGAGGGFGKGGGVGGGIGKGGGVGGGAGGGAGGGAGGGFCKGGGVGGGIGKGGGVGGGVGGGVGGGAGGGIGKGGVVGG
GTGEGAGGGFGKGGGVGGGIGKGGGVGGGAGGGASGGAGGGFGKGGGVGGGIGKGGGVGGGAGGGFGKGGGFGGGSGGGFGKGGGISGGGGGGGGFGGGS
GGGIGGGFGKGGGVGVGGGGGGFGGGGGGGFGGGGGGGGHQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011795
[exp]
0 1
AT5G10140 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING L... Lus10003123
[exp]
1.0 0.8444
AT2G25737 Sulfite exporter TauE/SafE fam... Lus10022133
[exp]
2.0 0.8171
AT3G23450 unknown protein Lus10023749
[exp]
2.8 0.7803
AT5G56750 NDL1 N-MYC downregulated-like 1 (.1... Lus10026433
[exp]
9.2 0.7902
AT5G04930 ALA1 aminophospholipid ATPase 1 (.1... Lus10008947
[exp]
9.5 0.7844
AT1G72970 HTH, EDA17 HOTHEAD, embryo sac developmen... Lus10037640
[exp]
10.5 0.8085
AT4G25960 ABCB2, PGP2 ATP-binding cassette B2, P-gly... Lus10000910
[exp]
11.3 0.7924
AT4G23290 CRK21 cysteine-rich RLK (RECEPTOR-li... Lus10019599
[exp]
13.2 0.7183
AT4G25960 ABCB2, PGP2 ATP-binding cassette B2, P-gly... Lus10004571
[exp]
15.2 0.7843
AT2G03090 ATHEXPALPHA1.3,... EXPANSIN 15, expansin A15 (.1) Lus10020257
[exp]
16.4 0.7379

Lus10011795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.