Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62960 104 / 6e-28 ACS10 ACC synthase 10 (.1) AT5G51690 86 / 3e-21 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT4G37770 66 / 2e-14 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT5G65800 63 / 3e-13 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT3G49700 62 / 4e-13 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT4G26200 62 / 6e-13 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT2G22810 57 / 2e-11 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT4G08040 52 / 2e-09 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT3G61510 52 / 2e-09 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT4G11280 51 / 3e-09 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007021 [exp] 119 / 2e-33 AT1G62960 612 / 0.0 ACC synthase 10 (.1) Lus10006676 [exp] 119 / 3e-33 AT1G62960 620 / 0.0 ACC synthase 10 (.1) Lus10015023 [exp] 87 / 1e-21 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10038899 [exp] 84 / 9e-21 AT5G51690 702 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10039647 [exp] 65 / 5e-14 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007223 [exp] 62 / 8e-13 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10032695 [exp] 61 / 1e-12 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 61 / 2e-12 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10008579 [exp] 60 / 3e-12 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G117700 [exp] 107 / 5e-29 AT1G62960 664 / 0.0 ACC synthase 10 (.1) Potri.015G132100 [exp] 97 / 3e-25 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.014G012600 [exp] 69 / 2e-15 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.007G007800 [exp] 66 / 2e-14 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.018G067000 [exp] 64 / 1e-13 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G113900 [exp] 64 / 1e-13 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.006G149600 [exp] 63 / 3e-13 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G163700 [exp] 61 / 9e-13 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.003G132300 [exp] 54 / 3e-10 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.001G099400 [exp] 53 / 6e-10 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10011796 pacid=23165531 polypeptide=Lus10011796 locus=Lus10011796.g ID=Lus10011796.BGIv1.0 annot-version=v1.0 ATGGTGGATTCTTCGATCTGTTGGGAGAATATGAATGGGCTGATAAGCTCATATAGTGAGAAAGGAGAGCTTGAGCTTTGGGACAAATTATTGAACACTG CTAAGCTCTATGTAACTCCTGGATCTTGCTGGCATTGCATCGAACAGGGATGGTTCATATTCTGCTTTGCTACCTTGACCGAGGGCGACATCCCTGTGGT TATCAATTCGAATACGTCGTATTTCTAA
AA sequence Show only first row Show all	>Lus10011796 pacid=23165531 polypeptide=Lus10011796 locus=Lus10011796.g ID=Lus10011796.BGIv1.0 annot-version=v1.0 MVDSSICWENMNGLISSYSEKGELELWDKLLNTAKLYVTPGSCWHCIEQGWFIFCFATLTEGDIPVVINSNTSYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10011796 [exp]	0	1
AT4G30550		GGP3	gamma-glutamyl peptidase 3, Cl...		Lus10015493 [exp]	6.0	0.9354
					Lus10017955 [exp]	10.0	0.9225
AT2G24960			unknown protein		Lus10042421 [exp]	11.6	0.9142
					Lus10009927 [exp]	12.3	0.9129
					Lus10039496 [exp]	14.0	0.9111
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	15.9	0.9088
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10008669 [exp]	17.3	0.9041
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10006555 [exp]	18.3	0.8337
					Lus10036765 [exp]	19.0	0.8989
					Lus10018837 [exp]	19.2	0.9018

Compare expression of checked genes

Lus10011796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.