Plant FIBer expression Database

Lus10011797 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44060 85 / 1e-21 unknown protein
AT1G04000 77 / 2e-18 unknown protein
AT3G23440 72 / 3e-17 EDA6, MEE37 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003619
[exp]
84 / 4e-21 AT5G44060 100 / 2e-27 unknown protein
Lus10008237
[exp]
47 / 3e-07 AT1G04000 79 / 2e-19 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G068800
[exp]
137 / 2e-42 AT3G23440 94 / 5e-26 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1)
Potri.002G259400
[exp]
79 / 2e-19 AT1G04000 87 / 2e-22 unknown protein
PFAM info
Representative CDS sequence
>Lus10011797 pacid=23165564 polypeptide=Lus10011797 locus=Lus10011797.g ID=Lus10011797.BGIv1.0 annot-version=v1.0
ATGAGTTTCCAGTCCAGTAGGATGCTGCTGCCTGGCGAATCTCGGAAGCGGAAAGAGAGAGAACCACATCCAGGGTTTTATTCCGTGAAGCCATCAATTT
CATCGTCTTGGCCACTTCATCAACTCCACCGCAAGCCGGAGCAGGATCCGCCGCCGCCGTCTTCCAACGTGCTGCTGGCCGGTTACCTAGCTTACGAGTT
CCTATCTAGAGGGACGATTCTGGGAGAGAAGTTCGATCCGGCGAGGGCGGAGGCTGCCTCTGTTGCGCAGCCGCTGTCAGGGAGCCGGAGAAGTAAAGGA
GCGGAGGTGATGGTGACGGAGGGGAAGAAAAATGAGGATGACGAGAGGAAATATGCGGAGGTGGCAAGCTTGTTGACAACGGAAGGGGCCCATATTCCTG
GGATTGTGAACCCTTGTCAACTGGCGCGGTGGGTGAAGATGTAA
AA sequence
>Lus10011797 pacid=23165564 polypeptide=Lus10011797 locus=Lus10011797.g ID=Lus10011797.BGIv1.0 annot-version=v1.0
MSFQSSRMLLPGESRKRKEREPHPGFYSVKPSISSSWPLHQLHRKPEQDPPPPSSNVLLAGYLAYEFLSRGTILGEKFDPARAEAASVAQPLSGSRRSKG
AEVMVTEGKKNEDDERKYAEVASLLTTEGAHIPGIVNPCQLARWVKM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G44060 unknown protein Lus10011797
[exp]
0 1
AT3G55830 EPC1 ECTOPICALLY PARTING CELLS, Nuc... Lus10027392
[exp]
4.2 0.8752
AT2G31200 ADF6, ATADF6 actin depolymerizing factor 6 ... Lus10022933
[exp]
5.5 0.8597
AT1G65720 unknown protein Lus10031363
[exp]
6.6 0.8807
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Lus10038356
[exp]
9.2 0.8740
AT2G45260 Plant protein of unknown funct... Lus10030291
[exp]
10.2 0.8552
AT5G01410 PDX1, ATPDX1.3,... REDUCED SUGAR RESPONSE 4, ARAB... Lus10036181
[exp]
10.2 0.8711
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10023213
[exp]
17.7 0.8520
AT4G35550 HD HB-4, WOX13, AT... WUSCHEL related homeobox 13 (.... Lus10040447
[exp]
18.0 0.8406
AT1G05780 Vacuolar ATPase assembly integ... Lus10033833
[exp]
19.5 0.8478
AT2G42005 Transmembrane amino acid trans... Lus10001390
[exp]
20.8 0.8438

Lus10011797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.