Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23430 1035 / 0 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT1G68740 611 / 0 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 441 / 9e-144 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 429 / 4e-139 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 414 / 3e-133 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 410 / 3e-132 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 407 / 3e-131 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 400 / 6e-128 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 397 / 3e-127 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 396 / 4e-126 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021164 [exp] 1415 / 0 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10019155 [exp] 694 / 0 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 620 / 0 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 392 / 6e-125 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 381 / 2e-120 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 377 / 7e-119 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 373 / 2e-117 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 366 / 4e-117 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 369 / 2e-116 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069000 [exp] 1168 / 0 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 1117 / 0 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G132300 [exp] 663 / 0 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 660 / 0 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 445 / 2e-145 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 408 / 4e-131 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 403 / 5e-129 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 400 / 5e-128 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 396 / 2e-126 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 395 / 3e-126 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10011799 pacid=23165522 polypeptide=Lus10011799 locus=Lus10011799.g ID=Lus10011799.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTCTCAAAAGAGCTAGAAGCTCAGCTTATCCCAGAATGGAAAGAAGCCTTTGTCAATTACTGGCAGCTGAAGAAGCACGTCAAGAAGCTTA AGCTTGCCACTATACCAAAACCTTGTTCCAAACTCATCATCAACCATGCCCATTTCGGCTTCTCCGTTTTCGACCCTCTTCGATCCCTCTTCTCCTCCCG CTCTTCCTCCGCCTCCTCCGAGATCATTCAGGTGAGGAGGAGAATGACGGATGGCGGCGACCAAGAAGTCTACCAAACTGAGCTTGTCCAGCTCTTCTCC GAGGAGGACGAGATGAGGGCATTTTTTGGGAGACTGGACGAGGAGCTGAACAAAGTGAACCAGTTCTACAAGGCGAAAGAGAACGAGTTCATGCAGAGGG GAGAAATCCTGCAGAAGCAGCTGGAGATCTTGGTTGACCTCAAGCGGATTCTCACCGACCGCCGCCAAGGAGGGCTACAGAGCGAGTTGAGCGGCGGCGA GACCCCAACGTCGACGGAGCAGTCGGAGACGGAAGAAGTGATAGCGGCGCTGGAGAGGAACGGGGTGAGCTTCGTGAATTCAAACACGCGGTCCAAAACA AAGAAAGGGAACGGAAACAACAACAACAATAAGCCGAAGATGGCTCTGAGGGTGGACATTCCGGCAACCACTCCGACGAAGACGATCGCGGCCGTGACGT CAATGTTGTGGGAAGATCTGGTGAACAACCCGAAAAGGGGAGAAGCCGGCGGCGGAGACTACATAAACCGGAAGAAAGTGCAGTGCGCCGAGAAGATGAT CCGGAGTGCTTTTGTTGAGCTGTACCGTGGCCTTGGCCTCCTCAAAACTTACAGCTCACTCAACATGGTGGCGTTTACGAAAATACTCAAGAAATTCGAC AAGGTGGCAAACCAGCAGGCATCACCAAGTTATCTAAGAGAGGTGAAGAAGTCTCACTTCATTAGCTCTGACAAGGTGGTGAGGCTAATGGATGAAGTGG AGTGCATATTCACAAAGCACTTCGCCAACAACGATAGGAAAAAGGCAATGAAATTCCTCCGGCCACAGCAACAAAAGGAGTCACACATGGTCACCTTTTT CGTCGGCTTGTCCACAGGCTGTTTCGTCTCACTGTTCATCGTATACGCAATTTTGGCACATCTTACTGGCATCTTCAGCCCCACTACTGGCCGCTCCTAT GTTGAAACTGTCTACCCTGTTTTCAGTGTGTTTGCATTGCTGAGCTTGCACGTGTTCATGTACGGGTGCAACCTGTTCATGTGGAAGGGGACTCGGATCA ACTATAACTTCATCTTTGAATTCCAACCCACCACTTCCCTCAAGTACAGAGACGCCTTCCTCATTTGCACCACTTTCATGACCTCTGTCATCAGTGCCAT GGTCCTCCATCTCCTCTTAAGGGCTAGTGGCTTCTCCCCCAGCCAAGTTGATGCCATTCCAGGAGTCATCTGCTTGATATTCTTGGCACTGCTCATTTGT CCATTTGACGTCCTGTATCGTCCGACACGTTACTACTTCATCCGAGTCATACGCAACATCGTCTTCTCTCCATTCTACAAGGTTCTCATGGTTGACTTCT TCATGGCTGACCAACTCACCAGTCAGATTCCGCTGCTGCGACACATGGAATCGACAGCATGCTACTTCCTAGCTGGGAGTTTCAGGACTCACCAGTACGA GACCTGCCACTCTGGAAGGATGTACAGAGAGATTGTTTATGTCATCTCATTTTTGCCTTATTACTGGAGAGCTATGCAGTGTGCAAGAAGATGGTTTGAT GAGTCTGACGTCAACCATTTGGCCAACATGGGGAAATATGTCTCGGCCATGGTAGCTGCTGGTGCGAGGTTGACGTATGCCAGACAAGAGAATCACTTGT GGTTCTCTATTGTACTAGCTACTTCTGCATTCGCCACCTTGTACCAGTTGTACTGGGATTTCGTCAAGGACTGGGGGCTTATGAACCCCAAATCGAAGAA TCCTTGGCTCAGAGATGAACTGATCCTCAAGAACAAATCCATCTACTACATCTCCATGGGGTTGAATGTAGTGTTGAGAGTTGCATGGGTTGAAGCAGTG ATGGGTTTCCGGTTCAACAATATTGTCGAGTCGAGAATGTTGGACTTCTTCTTGGCTTCTCTGGAGGTTATTCGCCGAGGACACTGGAACTACTACAGGT TGGAGAATGAGCATTTGAACAACGTTGGCAAGTTCAGGGCAGTCAAGTCTGTTCCCTTACCGTTTCGCGATACAGATTCAGACTGA
AA sequence Show only first row Show all	>Lus10011799 pacid=23165522 polypeptide=Lus10011799 locus=Lus10011799.g ID=Lus10011799.BGIv1.0 annot-version=v1.0 MVKFSKELEAQLIPEWKEAFVNYWQLKKHVKKLKLATIPKPCSKLIINHAHFGFSVFDPLRSLFSSRSSSASSEIIQVRRRMTDGGDQEVYQTELVQLFS EEDEMRAFFGRLDEELNKVNQFYKAKENEFMQRGEILQKQLEILVDLKRILTDRRQGGLQSELSGGETPTSTEQSETEEVIAALERNGVSFVNSNTRSKT KKGNGNNNNNKPKMALRVDIPATTPTKTIAAVTSMLWEDLVNNPKRGEAGGGDYINRKKVQCAEKMIRSAFVELYRGLGLLKTYSSLNMVAFTKILKKFD KVANQQASPSYLREVKKSHFISSDKVVRLMDEVECIFTKHFANNDRKKAMKFLRPQQQKESHMVTFFVGLSTGCFVSLFIVYAILAHLTGIFSPTTGRSY VETVYPVFSVFALLSLHVFMYGCNLFMWKGTRINYNFIFEFQPTTSLKYRDAFLICTTFMTSVISAMVLHLLLRASGFSPSQVDAIPGVICLIFLALLIC PFDVLYRPTRYYFIRVIRNIVFSPFYKVLMVDFFMADQLTSQIPLLRHMESTACYFLAGSFRTHQYETCHSGRMYREIVYVISFLPYYWRAMQCARRWFD ESDVNHLANMGKYVSAMVAAGARLTYARQENHLWFSIVLATSAFATLYQLYWDFVKDWGLMNPKSKNPWLRDELILKNKSIYYISMGLNVVLRVAWVEAV MGFRFNNIVESRMLDFFLASLEVIRRGHWNYYRLENEHLNNVGKFRAVKSVPLPFRDTDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10011799 [exp]	0	1
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	4.5	0.9013
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	7.9	0.9049
AT5G46600			Aluminium activated malate tra...		Lus10022030 [exp]	15.0	0.8758
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10001195 [exp]	20.1	0.8419
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10027197 [exp]	20.7	0.8607
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	22.5	0.8711
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	23.0	0.8935
AT5G50090			unknown protein		Lus10034124 [exp]	23.0	0.8503
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	23.2	0.8970
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10041267 [exp]	23.5	0.8951

Compare expression of checked genes

Lus10011799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.