Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23410 494 / 5e-170 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT4G28570 486 / 5e-167 Long-chain fatty alcohol dehydrogenase family protein (.1) AT1G03990 437 / 7e-148 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 316 / 3e-101 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024922 [exp] 491 / 1e-168 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10022903 [exp] 489 / 3e-168 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 485 / 2e-166 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 485 / 2e-166 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10037257 [exp] 317 / 7e-102 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10035673 [exp] 308 / 6e-98 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 235 / 1e-75 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 546 / 0 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 536 / 0 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 310 / 3e-98 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 183 / 3e-52 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210325 [exp] 48 / 1e-05 AT1G03990 67 / 4e-11 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210150 [exp] 48 / 1e-05 AT4G28570 51 / 4e-06 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10011800 pacid=23165546 polypeptide=Lus10011800 locus=Lus10011800.g ID=Lus10011800.BGIv1.0 annot-version=v1.0 ATGGATAAGGTCTGGGAGAGACTTAGGGTTACGGAGAAATGCGCGGCGGAAGGGTTGCAGAACCAAGTTCTCCGGAAGGGATGCGAGAATTTAGGGCTCG AAGTTCATTCGGTAGCGCGGAATTCCTCCGAGGATCATTACTGTGGCTCCTGCGGCTACGGCTGCCGGAGAGGAGACAAGAAAGGTACGGACTCGACTTG GCTGGTGGATGCAGTGGAACAAGGTGCAGTGATTCTTACAGGTTGCAAAGCGGAGAGATTCATACTCCAAGAAAACAAAGGATCTGAGGGCAGAAGAAGG AAACTGAGATGCTCAGGAGTTACAGCGAGAATCATGGGTGGCTGCAAAATCCAATCGAAGCTGGAAATTCAAGCCACGGTAACTATTTCAGCCTGTGGCT CTTTACAAACTCCTCCCCTTCTATTTAGAAGCGGGTTAAAGAATAAGCACATAGGGAGAAACCTTCATCTCCACCCAGTTGCAATGGCTTGGGGGTACTT CCCGGAATCGAATGCGGAAATGAAAGGTAAAGCATATGAGGGTGGGATAATAACATCGATGCATAAGGTGTTGTCGGAGGAGGAAACAATAAAAGCTATA CTGGAAACTCCAATGTTAGGGCCATCGCAATTTGTGGCATTATGTCCATGGGAGTCTGGATCCGATTTCAAAGCCAGAATGCTGAGGTATTCGAGAACAT CTCATATCATAGTCATTGTGAAGGATGTAGGAAGTGGGGAAGTGAAGCGGGAAGGAAGGGTAACCTATCCAGTGGATTCACGTGACAGGGAGAATGTCAG GATCGGATTGCAGCGGGCGCTGAGGATTCTGGTGGCTGCAGGGGCGGTGGAGGTCGGAACTCACCGCAGCGATGGTCAGAGGTTGAAATGTGAAGGAATT GGGGAGAAGGAGTTGGATGAGTTTATAGAGAGTGTGACGGCATCGAGAGGGGCAATGTCTGTAGGGGAGGAGGAATGGATGGTTTATACTTCGGCTCATC AGATGGGGAGCTGCAGAATGGGGTTTGGAGAGGAAGATGGCGCGGTTGATGAGAATGGAGAGAGTTGGGAAGCTAAAGGATTGTTCGTTTGTGACGGTAG TGTTCTTCCAAGTGCTGTTGGTGTCAACCCTATGATTACTATCCAGTCCACTGCTTATTGTTTATCCAAGAGAATTGCGGAGACGCTGAAGATCACATCA GCATGA
AA sequence Show only first row Show all	>Lus10011800 pacid=23165546 polypeptide=Lus10011800 locus=Lus10011800.g ID=Lus10011800.BGIv1.0 annot-version=v1.0 MDKVWERLRVTEKCAAEGLQNQVLRKGCENLGLEVHSVARNSSEDHYCGSCGYGCRRGDKKGTDSTWLVDAVEQGAVILTGCKAERFILQENKGSEGRRR KLRCSGVTARIMGGCKIQSKLEIQATVTISACGSLQTPPLLFRSGLKNKHIGRNLHLHPVAMAWGYFPESNAEMKGKAYEGGIITSMHKVLSEEETIKAI LETPMLGPSQFVALCPWESGSDFKARMLRYSRTSHIIVIVKDVGSGEVKREGRVTYPVDSRDRENVRIGLQRALRILVAAGAVEVGTHRSDGQRLKCEGI GEKELDEFIESVTASRGAMSVGEEEWMVYTSAHQMGSCRMGFGEEDGAVDENGESWEAKGLFVCDGSVLPSAVGVNPMITIQSTAYCLSKRIAETLKITS A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Lus10011800 [exp]	0	1
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10011801 [exp]	1.0	0.8525
AT3G16510			Calcium-dependent lipid-bindin...		Lus10006523 [exp]	69.8	0.6662
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10002486 [exp]	74.0	0.6567
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041613 [exp]	89.9	0.6366
AT1G27060			Regulator of chromosome conden...		Lus10012474 [exp]	99.9	0.5753
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011981 [exp]	104.0	0.6141
AT2G37730			Protein of unknown function (D...		Lus10024364 [exp]	111.6	0.6361
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10020411 [exp]	116.4	0.6303
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10041304 [exp]	168.3	0.5896
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	184.8	0.6112

Compare expression of checked genes

Lus10011800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.