Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28570 216 / 2e-64 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 206 / 1e-60 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT1G03990 195 / 2e-56 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 127 / 3e-32 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008239 [exp] 218 / 1e-64 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10022903 [exp] 217 / 2e-64 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 216 / 3e-64 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 193 / 1e-55 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10035673 [exp] 155 / 6e-42 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10037257 [exp] 112 / 2e-27 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 286 / 1e-90 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 274 / 3e-86 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 114 / 6e-28 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 100 / 3e-23 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00890 [flax] [poplar] FAD_binding_2 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10011801 pacid=23165565 polypeptide=Lus10011801 locus=Lus10011801.g ID=Lus10011801.BGIv1.0 annot-version=v1.0 ATGGCGAAACAGGGCGGCCGCCAGTCTCATCCCTTATTGAACGGATCCAGGAGACAAACCAAATACACACACGGCCTCTCTTCCATCGAGATTCAATCCC TCGCCGCCCTCTGCGACACCTTCTTCCCATCCTTACCGCCCCCGTCCAATGATCACCACCACCAACTCTTCTACAGAGCATCCGCCGGAACATCCCCTGT CCCCGACGAGGTGGCGGAGATATTGACGAGCAGGTTGTTACCGGAGGCGGTGGTTCTGGTGAGAGTGGTGCTGTTGGCGTTGTGGAGCAGAGTGGGGACG TTTGTGATGGGTGGATCACTGTGCTTTAAGTGGCCTTATGTGAAGAGCTTCTGCGAGATGCCGGTGGAGAAGAGGGAGAGATTTGTGCAGAATTGGATGA AGCATCGATTCTTTACTCCTTTAAGACTTGGCTTCATTCTTGTCAAAATCCTCTGCCTCTACACCTTCTTCTCCCTGGTGGACGAAAACGGCGATAACCC AGCATGGAAAGCAATCGGCTATCGAGTCGACGCCGCCGACGAGAATTCACCAACCGACGCTGCGAAAGAGAGGCCGCTCCAAGACGGAATTTTGGAAGCT GCTCAAGAATCCCATTCCACCTTTCTCCAATCCCTCACCAAAAAAGGCCTCGGAGTCACTAGAGACTCCAACAGTGACATCTATAGGATCCAATGCGACG TCGTGGTTGTCGGCTCCGGCTGCGGAGGGGGAGTCGCGGCAGCAGTCCTCGCTGCTGCCGGCCACAAGGTTCTCGTTCTGGAGAAAGGGAACTATTTCAC TTCCGCCGATTACTCTTCCATTGAAGGCCCTTCCATGGAGCAATTGTACGAAAACGGAAGCATCTTCCCCTGCGACGTCGGGAACATCGCGATCCTCGCC GGATCCACTGTATCCTCGCCGGCTCCACTGTCGGCGGCGGTTCAGCCATCAACTGGTCCGCTTGCGTCAGGACGCCGGAATCGGTGCTGA
AA sequence Show only first row Show all	>Lus10011801 pacid=23165565 polypeptide=Lus10011801 locus=Lus10011801.g ID=Lus10011801.BGIv1.0 annot-version=v1.0 MAKQGGRQSHPLLNGSRRQTKYTHGLSSIEIQSLAALCDTFFPSLPPPSNDHHHQLFYRASAGTSPVPDEVAEILTSRLLPEAVVLVRVVLLALWSRVGT FVMGGSLCFKWPYVKSFCEMPVEKRERFVQNWMKHRFFTPLRLGFILVKILCLYTFFSLVDENGDNPAWKAIGYRVDAADENSPTDAAKERPLQDGILEA AQESHSTFLQSLTKKGLGVTRDSNSDIYRIQCDVVVVGSGCGGGVAAAVLAAAGHKVLVLEKGNYFTSADYSSIEGPSMEQLYENGSIFPCDVGNIAILA GSTVSSPAPLSAAVQPSTGPLASGRRNRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10011801 [exp]	0	1
AT3G23410		ATFAO3	ARABIDOPSIS FATTY ALCOHOL OXID...		Lus10011800 [exp]	1.0	0.8525
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10015656 [exp]	106.7	0.6051
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10042046 [exp]	233.1	0.5569
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10041304 [exp]	277.0	0.5589

Compare expression of checked genes

Lus10011801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.