Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14310 801 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021166 [exp] 1373 / 0 AT4G14310 787 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169200 [exp] 1008 / 0 AT4G14310 814 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G069200 [exp] 994 / 0 AT4G14310 830 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011802 pacid=23165517 polypeptide=Lus10011802 locus=Lus10011802.g ID=Lus10011802.BGIv1.0 annot-version=v1.0 ATGTCAGCCCCGTCAACTCGCCGGCTAAGAGACCGAGACGTCGTCTCGGCACCCAAAACCGCCGCCGCTCTGAAATCCGCCAAAACCCTTACTCCGGTTT CGTCCACCTTCAGAAACCCTAGTCCCACCTTGAGGAGTTCATCCTCTACTAAAGAGAGGCTCGGTTGGCTCGGTTCCCGAGTTCCGCGGCCGGCGATTAA ACAGGTTCCAGGGGTCGATAAGGCTGCAGCCTCAGCGGTACCATCCAAGGGCGAGGCGAATGAGGCGCGGGCGAGGCGGTCCACGTCATCAGTCCCCAGA GGTAGGAGCCAGAGTCCTTCTGATTTCATTAGGGTTTTTAGGGATTCTAGGATTCTGAAAGGGGAATCGGATAATCGTTCCGCGTCGAGAGGGAAAAAGA GCGGGAGTAGGTTTATCAGAGATGATAAGGAGAACACCGGATTTAGCGCTGGTCTGTCCCAAAAACGAGCGACTTGGGAAGGAAAGAATTTAAGAACTGA AGAGGCAGAGAGTGATTTGGCATCCATTCGAAATGTGGAGGGTAATGGTGCACATAAGTTGAATCCTGCTTTAAAGGCAACCGAAGGTATGAAACTTAAT AAGTTCGGTGGAGAGAAATCTGATTCGGATTCCAAACTTGATCGTGTGAGAGTATCTGGTCATAAATCTGCTGGTAAAGTTAGGGTTTCTGAGAACCGGA AAGAGACGAGCCTGATGGAAGACGGAACAAGAAATAAGGTTAGTGATGGCTATCCAAGCAGGCTGCACGAGAAGCTTGCTTTCTTGGAAGGGAAAGTGAA GAGAATTGCTTCTGATATCAAGAGAACCAAGGAGATCTTGGATATGAACAACCCTGATGCTTCCAAGGTTGTACTGTCAGATATCCAAGAGAAGATTTCT GGTATAGAGCAGGCGATGGTACATGTTGTCGGCGATTCTTCTAAGGGAGATGTGAAAGATAAGTTAAAGAGTAAGGTTGTTGAAAAGAATGAAAACGAAG GAATGGAGGAGGCTAAGGTTCTGGTTAAAGGATTAAACAGCGAGGAGCTTGAAGCAAGGCTTTTCCCTCATCAGAAGTTGCTAAGAAATAGGACATCTTT GAAAGTCAGGTCAGGAAGTTCTCAAATTCACGATGGCAACTGTAGTGCTGTGGAATCTAGTGACAAGGTGAATGTAGATGAAAAATTGTTGATCTCTGCT GAGGTGAACCCAATAGAATTAGGGTTTTTGGATTCGCTAAATAGAGAAAACAAGTGTGGTGAAGGGAGTAGAAGAACAGGAATTGAACTTCAAGACGTGG AAGGTATTGAAGCCCCTCACTCAGAAAACTCCGCAAAGATGTATGATGGCAAAGATGGAGATGCATTTACTCTTGCAGCCGATGAAACACTGGAAGAATT TGATGACGTGGAAAACAAACCAACTGCTGGCGAGGAGATGGATGAGACTAATGTCCAACAACTGAATGTGATAGGTGTCAAGACTTCAACCGGAGGCTGG TTTGTATCAGAGGGAGAGTCGGTTCTTCTAGCTCATGATGACGGGTCCTGCTCATTTTATGATATTGCCAACTCCGAGGAGAAAGCAGTATACAAGCCTC CATCAGGGATCTCACCAAGTATTTGGAGAGATTGTTGGATGATTAGAACACCTGGTGCTGATGGTTGTTCTACAAAATATGTCGTGGCTGCATCTGCAGG GAATTCACTTGATGCTGGTTTCTGTTCTTGGGATTTCTATACCAAAAGTGTACGAGCTTTCCACATTGAGGACGGAGCAACAACTACTGCTAGAACCATA CTTGGTCCATTGCCCAATACTTCCATACTCAGACGGACTACTTTGTCTAGTGTGTTGCAACCAGAAAGTCGACAATGGTGGTGCAGACCCTGTGGACCTC TCATCGTCTCTGCTGCCTGCTCCCAGCGAGCAGTCAAGATATTTGATATACGGGATGGCGATCAGATAATGAGATGGGAACTGCAGAAGCCGATGATGGG AATGGACCATTCAAGCCCTGTGCAGTGGAGGAATCGAGGGAAAATCATTTTAGCTGAATCAGAATCAATTTCTGTATGGGATGTGAACTCTCTGAGTCCT CAGTCGCTGTCAACAATCCCATTGTCTGGCCGAAAGATTACAGCTCTGAGTGTGGTCAACACTGATGCAGAACTGGGTGGAGGAGTTAGGCAAAGGGTAA CTTCCTCTGAAGCTGAAGGAAATGATGGTGTGTTCTGCACAACTGATGCTATCAACGTAATGGATCTTCGAAACCCATCTGGGATTGGTCTGAAAATACC CAAAATGGGAATGGATGCGCAGTCAGTATTCACTCGTGGAGATTCGATCTATGTCGGATGCACTAGTACAAGAAGCGGAGGGAAGAAGCAGCCATGTTCA CAAGTGCAGCAGTTCTCCATGCGGAAACAAAGGATAGTGAGTAGCTATTCTCTGCCGGAATCAGAAGCACACTCGTACCACTCTGCCATTACTCAGGTAT GGGGGAACTCAAACTATGTGATGGCAGTATCTGGTCTCGGACTTTTTGTGTTCGATTCGTTGAGAGATGATCAGGCTCAGTCAGCTGATTGTGGAAGTGG GCAGAAGGTTAAAGAAGTGATCGGCCCTGATGACTTGTACTCTCCTACGTTCGATTACTTGAGTTCTCGTGTTCTTCTCATATCAAGGGACCGTCCAGCG CTTTATAGGCACTTGGTGTAG
AA sequence Show only first row Show all	>Lus10011802 pacid=23165517 polypeptide=Lus10011802 locus=Lus10011802.g ID=Lus10011802.BGIv1.0 annot-version=v1.0 MSAPSTRRLRDRDVVSAPKTAAALKSAKTLTPVSSTFRNPSPTLRSSSSTKERLGWLGSRVPRPAIKQVPGVDKAAASAVPSKGEANEARARRSTSSVPR GRSQSPSDFIRVFRDSRILKGESDNRSASRGKKSGSRFIRDDKENTGFSAGLSQKRATWEGKNLRTEEAESDLASIRNVEGNGAHKLNPALKATEGMKLN KFGGEKSDSDSKLDRVRVSGHKSAGKVRVSENRKETSLMEDGTRNKVSDGYPSRLHEKLAFLEGKVKRIASDIKRTKEILDMNNPDASKVVLSDIQEKIS GIEQAMVHVVGDSSKGDVKDKLKSKVVEKNENEGMEEAKVLVKGLNSEELEARLFPHQKLLRNRTSLKVRSGSSQIHDGNCSAVESSDKVNVDEKLLISA EVNPIELGFLDSLNRENKCGEGSRRTGIELQDVEGIEAPHSENSAKMYDGKDGDAFTLAADETLEEFDDVENKPTAGEEMDETNVQQLNVIGVKTSTGGW FVSEGESVLLAHDDGSCSFYDIANSEEKAVYKPPSGISPSIWRDCWMIRTPGADGCSTKYVVAASAGNSLDAGFCSWDFYTKSVRAFHIEDGATTTARTI LGPLPNTSILRRTTLSSVLQPESRQWWCRPCGPLIVSAACSQRAVKIFDIRDGDQIMRWELQKPMMGMDHSSPVQWRNRGKIILAESESISVWDVNSLSP QSLSTIPLSGRKITALSVVNTDAELGGGVRQRVTSSEAEGNDGVFCTTDAINVMDLRNPSGIGLKIPKMGMDAQSVFTRGDSIYVGCTSTRSGGKKQPCS QVQQFSMRKQRIVSSYSLPESEAHSYHSAITQVWGNSNYVMAVSGLGLFVFDSLRDDQAQSADCGSGQKVKEVIGPDDLYSPTFDYLSSRVLLISRDRPA LYRHLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14310			Transducin/WD40 repeat-like su...		Lus10011802 [exp]	0	1
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10024756 [exp]	1.4	0.9626
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10017720 [exp]	2.8	0.9604
AT2G43990			unknown protein		Lus10008351 [exp]	2.8	0.9560
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10024822 [exp]	3.0	0.9637
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	3.9	0.9602
AT1G77580			Plant protein of unknown funct...		Lus10029679 [exp]	3.9	0.9431
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10000986 [exp]	4.6	0.9567
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	5.2	0.9624
AT3G10180			P-loop containing nucleoside t...		Lus10012103 [exp]	5.5	0.9570
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Lus10003750 [exp]	6.0	0.9533

Compare expression of checked genes

Lus10011802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.