Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23400 273 / 9e-92 FIB4 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) AT5G09820 45 / 2e-05 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021209 [exp] 345 / 4e-120 AT3G23400 305 / 4e-104 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) Lus10020860 [exp] 42 / 0.0003 AT5G09820 269 / 5e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Lus10033514 [exp] 42 / 0.0003 AT5G09820 270 / 3e-91 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169100 [exp] 293 / 1e-99 AT3G23400 267 / 2e-89 fibrillin 4, Plastid-lipid associated protein PAP / fibrillin family protein (.1) Potri.001G309300 [exp] 48 / 3e-06 AT5G09820 268 / 7e-90 Plastid-lipid associated protein PAP / fibrillin family protein (.1.2) Potri.003G020700 [exp] 44 / 6e-05 AT3G26070 244 / 6e-81 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04755 [flax] [poplar] PAP_fibrillin PAP_fibrillin
Representative CDS sequence Show only first row Show all	>Lus10011803 pacid=23165539 polypeptide=Lus10011803 locus=Lus10011803.g ID=Lus10011803.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTTAGCTCCTCCTCCCTCTATCCTCCTTCTACGCTCTGCTCCTGCTCTTCCTCTCGAACTTCCCTCCCCGCGGGGATTTCAATCGAAGCGA AACGCGTTCCTCGACATCCAAACAACCGTCTTCTCGCCCTTGGCTCTAGGAGTAGGAATAGGAGGAGGAGCAGCTTCGCTTTGAGATCGGTCCTTGAAGA CACCTACGTCCTCGACCCGCCACCGCCACCTCTTCCTCCCGCTAGCAGCCCTCAGCGTGTTTATTCTTTGAAGCTCAAACTGCTGAGTGTGGTTTCTGGG CTGAACCGGGGTCTGGCTGCAACTGAAGATGACCTAAAGAAGGCAGATGCTGCTGCCAAGGAGCTTGAAGATGCAGGGGGAATTGTGGATCTAGCGTGTG ACTTGGATAAGCTACAAGGGAACTGGAAGCTGATTTACAGCAGCGCCTTCTCTTCTCGAACTCTTGGTGGAAGTCGTCCCGGTATCCCTACCGGAAGGCT GTTACCTGTCACTCTTGGCCAGGTGTTCCAACGGATCGACGTTGTGAGCAGAGATTTTGACAACATAGCAGAGCTTCAATTGGGGACACCATGGCCACTA CCACCAGTAGATTTGACTGCAACCTTAGCCCACAAGTTTGAGCTCATAGGATCAGCCAAGATCAAAATCAACTTTGAGAAAACAACCGTGAAGACAACGG GGAACCTGGCACAACTTCCTCCACTCGACGTCCCTAGGTTACCAGACGGTCTAAGGCCTCCATCGAACCCAGGATCAGGGGACTTTGAGGTCACCTTCCT GGATGCTGACACTCGGATCACTCGAGGGGATCGCGGGGAGCTCAGGGTGTTTGTCATCTCATGA
AA sequence Show only first row Show all	>Lus10011803 pacid=23165539 polypeptide=Lus10011803 locus=Lus10011803.g ID=Lus10011803.BGIv1.0 annot-version=v1.0 MASFSSSSLYPPSTLCSCSSSRTSLPAGISIEAKRVPRHPNNRLLALGSRSRNRRRSSFALRSVLEDTYVLDPPPPPLPPASSPQRVYSLKLKLLSVVSG LNRGLAATEDDLKKADAAAKELEDAGGIVDLACDLDKLQGNWKLIYSSAFSSRTLGGSRPGIPTGRLLPVTLGQVFQRIDVVSRDFDNIAELQLGTPWPL PPVDLTATLAHKFELIGSAKIKINFEKTTVKTTGNLAQLPPLDVPRLPDGLRPPSNPGSGDFEVTFLDADTRITRGDRGELRVFVIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10011803 [exp]	0	1
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	4.1	0.8966
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	7.7	0.8943
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	7.9	0.8873
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	8.8	0.8620
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10007021 [exp]	10.6	0.8453
AT5G52420			unknown protein		Lus10027493 [exp]	17.9	0.8561
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	19.2	0.8776
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	20.2	0.8667
AT2G27290			Protein of unknown function (D...		Lus10005208 [exp]	23.5	0.8619
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014879 [exp]	23.7	0.8169

Compare expression of checked genes

Lus10011803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.